| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 17 | June-Reg | Roy Halladay | $$ | P | 18 | 5/14/1977 | 6-6 | 225 | R | R | MLB | 1998-2008 | West High School (Arvarda,CO) |
| 2 | 47 | June-Reg | Craig Wilson | $$ | C | 18 | 11/30/1976 | 6-2 | 217 | R | R | MLB | 2001-2007 | Marina High School (Huntington Beach,CA) |
| 3 | 76 | June-Reg | Jeff Maloney | | SS | 18 | 11/27/1976 | 6-4 | 190 | B | R | A+ | | Ridge High School (Basking Ridge,NJ) |
| 4 | 104 | June-Reg | Mike Whitlock | | 1B | 18 | 12/14/1976 | 6-3 | 200 | L | R | A+ | | San Lorenzo High School (San Lorenzo,CA) |
| 5 | 132 | June-Reg | Jay Veniard | | P | 20 | 8/16/1974 | 6-4 | 215 | L | L | AA | | University of Central Florida |
| 6 | 160 | June-Reg | Blaine Fortin | | C | 17 | 8/1/1977 | 6-2 | 205 | R | R | A- | | Lundar High School (Lundar,MB) |
| 7 | 188 | June-Reg | Jeremi Rudolph | | OF | 19 | 1/27/1976 | 5-8 | 170 | R | R | Rookie | | Apopka High School (Apopka,FL) |
| 8 | 216 | June-Reg | Dave Marciniak | | SS | 18 | 2/3/1977 | 6-2 | 200 | R | R | A+ | | Woodbridge High School (Woodbridge,NJ) |
| 9 | 244 | June-Reg | Kyle Burchart | | P | 18 | 8/18/1976 | 6-5 | 190 | R | R | A- | | Bixby High School (Bixby,OK) |
| 10 | 272 | June-Reg | Ryan Freel | | 2B | 19 | 3/8/1976 | 5-10 | 185 | R | R | MLB | 2001-2008 | Tallahassee Community College |
| 11 | 300** | June-Reg | Allen Levrault | | P | 17 | 8/15/1977 | 6-3 | 230 | R | R | MLB | 2000-2003 | Westport High School (Westport,MA) |
| 12 | 328 | June-Reg | John Curl | | 1B | 22 | 11/10/1972 | 6-3 | 205 | L | R | AAA | | Texas A&M University |
| 13 | 356** | June-Reg | Ted Lilly | | p | 19 | 1/4/1976 | 6-0 | 185 | L | L | MLB | 1999-2008 | Fresno City College |
| 14 | 384 | June-Reg | Jason Pomar | | p | | | | | R | R | A- | | Vero Beach High School (Vero Beach,FL) |
| 15 | 412 | June-Reg | Robert Corraro | | p | | | | | | | - | | Xavier High School (Middletown,CT) |
| 16 | 440 | June-Reg | Bill Brabec | | p | 21 | 9/30/1973 | 6-4 | 210 | R | R | Rookie | | Illinois State University |
| 17 | 468 | June-Reg | Johnny Byrd | | p | | | | | | | - | | University Christian High School (Jacksonville,FL) |
| 18 | 496** | June-Reg | Doug Dent | | p | 18 | 3/23/1977 | 6-8 | 210 | R | R | AA | | San Juan High School (Carmichael,CA) |
| 19 | 524 | June-Reg | Jaron Seabury | | p | 19 | 1/31/1976 | 6-4 | 215 | R | R | A+ | | Bellevue Community College (WA) |
| 20 | 552 | June-Reg | Braxton Whitehead | | 1B-C | 19 | 10/20/1975 | 6-2 | 215 | R | R | AA | | Meridian College |
| 21 | 580 | June-Reg | Logan Miler | | C | | | | | | | - | | Texas Tech University |
| 22 | 608 | June-Reg | Scott Fitterer | | p | 21 | 11/4/1973 | 6-2 | 200 | R | R | A+ | | Louisiana State University |
| 23 | 636 | June-Reg | Brian Bejarano | | 3B | 20 | 1/29/1975 | 6-2 | 200 | R | R | Rookie | | Central Arizona College |
| 24 | 664 | June-Reg | Mark Curtis | | p | 17 | 12/1/1977 | 6-4 | 190 | R | L | A- | | Bellerose High School (St. Albert,AB) |
| 25 | 692 | June-Reg | John Mitchell | | p | | | | | | | - | | California State University, Fullerton |
| 26 | 720 | June-Reg | John Kehoe | | 2B | | | | | | | A | | Cumberland University (Tenn.) |
| 27 | 748 | June-Reg | Robert Medina | | OF | 19 | 4/25/1976 | 6-2 | 193 | R | R | A- | | |
| 28 | 776 | June-Reg | Chris Hayes | | 3B | 21 | 12/23/1973 | 6-2 | 190 | R | R | AA | | Jacksonville University |
| 29 | 804 | June-Reg | Brian Williams | | C | | | | | | | A+ | | Southwest Texas State University |
| 30 | 832** | June-Reg | Brandon Duckworth | | p | 19 | 1/23/1976 | 6-2 | 185 | B | R | MLB | 2001-2007 | College of Southern Idaho |
| 31 | 860 | June-Reg | John Douglas | | SS | 21 | 7/20/1973 | 6-3 | 186 | R | R | Rookie | | Catholic University |
| 32 | 888 | June-Reg | Stanley Gay | | p | | | | | | | - | | |
| 33 | 916** | June-Reg | Todd Moser | | p | 18 | 10/28/1976 | 6-5 | 180 | L | L | AA | | Manatee Community College |
| 34 | 944 | June-Reg | Andrew McCormick | | Of | 22 | 6/21/1973 | 5-11 | 190 | R | R | A+ | | Grand Canyon University |
| 35 | 972 | June-Reg | Jonathan Herring | | p | 19 | 6/28/1976 | 6-3 | 190 | L | L | Rookie | | Alabama Christian Academy High School (Montgomery,AL) |
| 36 | 1000 | June-Reg | Randy Albaral | | Of | 18 | 2/27/1977 | 6-2 | 180 | R | R | A | | Jesuit High School (River Ridge,LA) |
| 37 | 1028 | June-Reg | Thomas Taylor | | SS | | | | | | | - | | Tate High School (Cantonment,FL) |
| 38 | 1056 | June-Reg | Tyrone Gracia | | 3B | | | | | | | - | | Dennis-Yarmouth Regional High School (South Yarmouth,MA) |
| 39 | 1084 | June-Reg | Eduardo Marquez | | Of | 18 | 2/24/1977 | 6-2 | 180 | R | R | A- | - | Mater Dei High School (Santa Ana,CA) |
| 40 | 1112** | June-Reg | Brian Leach | | p | | | | | | | Rookie | | Osceola High School (Largo,FL) |
| 41 | 1140 | June-Reg | Jesse Bechard | | SS | | | | | | | - | | Washington High School (Masillon,OH) |
| 42 | 1168 | June-Reg | Thomas Peck | | of | | | | | | | A+ | | Rollins College |
| 43 | 1196 | June-Reg | Justin Johnson | | of | | | | | | | - | | Diamond Bar High School (Diamond Bar,CA) |
| 44 | 1224** | June-Reg | Brian Fitts | | p | 18 | 7/25/1976 | 6-2 | 175 | R | R | A | | Gallatin High School (Gallatin,TN) |
| 45 | 1250 | June-Reg | Joe Pierson | | SS | | | | | | | - | | Huntington High School (Huntington,WV) |
| 46 | 1274 | June-Reg | Ryan Cisar | | SS | | | | | | | Rookie | | Magnolia High School (New Martinsville,WV) |
| 47 | 1298 | June-Reg | Antonio Jackson | | of | | | | | | | - | | Parker High School (Birmingham,AL) |
| 48 | 1320 | June-Reg | Paxton Stewart | | 1B | 21 | 5/4/1974 | 6-3 | 185 | L | R | A+ | | Florida International University |
| 49 | 1342** | June-Reg | Derek Hines | | of | 18 | 3/31/1977 | 6-2 | 205 | R | R | Rookie | | West High School (Arvarda,CO) |
| 50 | 1364 | June-Reg | Jeremy Satterfield | | p | 19 | 12/2/1975 | 6-3 | 200 | R | R | A- | | College of Southern Idaho |
| 51 | 1383** | June-Reg | Kyle Adams | | p | | | | | | | - | | Creighton Prep High School (Omaha,NE) |
| 52 | 1403 | June-Reg | Albert Colon | | of | | | | | | | - | | Apopka High School (Apopka,FL) |
| 53 | 1422** | June-Reg | Ryan Bundy | | C | 17 | 8/5/1977 | 6-1 | 210 | R | R | A+ | | Lake Stevens High School (Lake Stevens,WA) |
| 54 | 1440** | June-Reg | Claude Greene | | 1B | | | | 0 | | | A+ | | O'Dea High School (Seattle,WA) |
| 55 | 1458 | June-Reg | Travis Grant | | p | | | | | | | - | | Skyline High School (Salt Lake City,UT) |
| 56 | 1474 | June-Reg | Sidney Harden | | p | | | | | | | - | | Middle Georgia College |
| 57 | 1489 | June-Reg | Pat Schuttz | | of | | | | | | | - | | Community College of Rhode Island |
| 58 | 1503 | June-Reg | Doug Franklin | | 2B | | | | | | | - | | Pensacola Junior College |
| 59 | 1516 | June-Reg | Andy Tarpley | | p | | | | | | | - | | University of California |
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