| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 5 | June-Reg | Kenny Henderson | | P | | | | | | | - | | Ringgold High School (Ringgold,GA) |
| 1 | 15 | June-Reg | Tyrone Hill | | P | 19 | 3/7/1972 | 6-6 | 220 | L | L | AA | | Yucaipa High School (Yucaipa,CA) |
| 2 | 71 | June-Reg | Judd Wilstead | | P | 18 | 3/14/1973 | 6-4 | 205 | L | R | AA | | Dixie High School (St. George,UT) |
| 4 | 105 | June-Reg | Mike Harris | | 1B | | | | | | | AAA | | University of Kentucky |
| 5 | 131** | June-Reg | Nomar Garciaparra | | SS | 17 | 7/23/1973 | 6-0 | 175 | R | R | MLB | 1996-2008 | St. John Bosco High School (Bellflower,CA) |
| 6 | 157 | June-Reg | Cecil Rodrigues | | OF | 19 | 9/3/1971 | 6-0 | 165 | R | R | Rookie | | Indian River Community College |
| 7 | 183 | June-Reg | Derek Wachter | | OF | | | | | | | AAA | | Iona College |
| 8 | 209 | June-Reg | Mike Matheny | | OF | 20 | 9/22/1970 | 6-3 | 205 | R | R | MLB | 1994-2006 | University of Michigan |
| 9 | 235 | June-Reg | Bill Dobrolsky | | C | 21 | 3/16/1970 | 6-2 | 190 | R | R | AAA | | Shippensburg University of Pennsylvania |
| 10 | 261 | June-Reg | Jim Wilkie | | P | | | | | | | Rookie | | Triton College |
| 11 | 287 | June-Reg | Jeff Cirillo | | 3B | 21 | 9/23/1969 | 6-1 | 195 | R | R | MLB | 1994-2007 | USC |
| 12 | 313 | June-Reg | Paul Arredondo | | SS | | | | | | | Rookie | | Colton High School (Colton,CA) |
| 13 | 339 | June-Reg | Byron Browne | | p | 20 | 8/4/1970 | 6-7 | 200 | R | R | AAA | | Grand Canyon University |
| 14 | 365 | June-Reg | John Trisler | | p | 21 | 3/19/1970 | 6-4 | 235 | R | R | AA | | Indiana State University |
| 15 | 391 | June-Reg | Scott Talanoa | | 1B | | | | | | | AAA | | Long Beach State University |
| 16 | 417 | June-Reg | David Preikszas | | OF | | | | | | | Rookie | | Miami University (Ohio) |
| 17 | 443 | June-Reg | Chad O'Laughlin | | p | 19 | 1/9/1972 | 6-5 | 230 | L | L | A+ | | Southwestern Community College |
| 18 | 469 | June-Reg | Tim Albert | | OF | 22 | 11/7/1968 | 6-2 | 185 | L | R | AA | | University of Hawaii-Manoa |
| 19 | 495 | June-Reg | Mike Basse | | OF | | | | | | | AAA | | University of Tennessee |
| 20 | 521 | June-Reg | Michael Hancock | | p | | | | | | | AA | | Volunteer State Community College |
| 21 | 547 | June-Reg | Rob Gorrell | | p | 22 | 6/14/1969 | 6-2 | 195 | R | R | Rookie | | Arizona State University |
| 22 | 573** | June-Reg | Scott Morgan | | 3B | 17 | 7/19/1973 | 6-7 | 230 | R | R | AAA | | Lompoc High School (Lompoc,CA) |
| 23 | 599 | June-Reg | Brian Dennison | | p | 22 | 2/20/1969 | 6-3 | 200 | R | L | Rookie | | University of Arkansas |
| 24 | 625 | June-Reg | Andy Fairman | | 1B | 21 | 4/9/1970 | 6-2 | 210 | L | L | A+ | | University of Michigan |
| 25 | 651 | June-Reg | Michael Swenson | | p | | | | | | | - | | Chamberlain High School (Tampa,FL) |
| 26 | 677 | June-Reg | Derek Ghostlaw | | OF | | | | | | | Rookie | | Bentley College |
| 27 | 703 | June-Reg | Mark Stillwell | | 1B | | | | | | | Rookie | | Kaiser High School (Honolulu,HI) |
| 28 | 729 | June-Reg | Antonio Valdez | | p | | | | | | | - | | Miami Beach (PA) |
| 29 | 755 | June-Reg | Steven Brown | | p | | | | | | | - | | Central Arizona College |
| 30 | 781** | June-Reg | Mark Sobolewski | | C-3B | | | | | | | AA | | Florida Southern College |
| 31 | 807 | June-Reg | Brent Simonian | | OF | | | | | | | - | | Fowler High School (Fowler,CA) |
| 32 | 833 | June-Reg | Howard House | | OF | 21 | 7/26/1969 | 5-11 | 185 | L | L | A | | Howard University |
| 33 | 859** | June-Reg | Ossie Garcia | | p-OF | 17 | 10/14/1973 | 6-1 | 180 | R | R | AA | | American High School (Hialeah,FL) |
| 34 | 885 | June-Reg | Mike Lawn | | Of | 22 | 10/27/1968 | 6-3 | 190 | R | R | A+ | | University of California |
| 35 | 911 | June-Reg | Geoff Hughes | | Of | | | | | | | - | | Naperville North High School (Naperville,IL) |
| 36 | 937** | June-Reg | Bobby Jones | | Of | | | | | | | Rookie | | Arlington High School (Riverside,CA) |
| 37 | 963 | June-Reg | Albert Harvell | | p | | | | | | | - | | San Jose City College |
| 38 | 989 | June-Reg | Jason Imperial | | 3B | 21 | 12/14/1969 | 6-1 | 205 | R | R | A | | Rutgers University |
| 39 | 1014 | June-Reg | Maurice Crum | | C-1B | | | | | | | - | | University of Miami (Florida) |
| 40 | 1040 | June-Reg | Mike Stefanski | | C | 21 | 9/12/1969 | 6-2 | 190 | R | R | AAA | | University of Detroit |
| 41 | 1065 | June-Reg | Brad Gay | | C | | | | | | | A+ | | Hillsborough Community College |
| 42 | 1090 | June-Reg | Jerry Fisher | | p | | | | | | | - | | Southern High School (Baltimore,MD) |
| 43 | 1115 | June-Reg | Michael Mace | | p | | | | | | | - | | Gulf Coast Community College |
| 44 | 1140 | June-Reg | Bobby Jones | | p | 19 | 4/11/1972 | 6-0 | 178 | R | L | MLB | 1997-2004 | Chipola College |
| 45 | 1165 | June-Reg | Jackie Ross | | of | 19 | 10/28/1971 | 5-7 | 158 | B | R | A | | Miami-Dade College |
| 46 | 1190 | June-Reg | Charles Payne | | p | | | | | | | - | | Battle Ground Academy High School (Franklin,TN) |
| 47 | 1215 | June-Reg | Francisco Gonzalez | | p | | | | | | | Rookie | | |
| 48 | 1239 | June-Reg | Tommy Schenbeck | | p | 19 | 6/21/1972 | 6-1 | 205 | R | R | A+ | | Palm Beach Community College |
| 49 | 1262 | June-Reg | Scott Wayne | | C | | | | | | | - | | Englewood High School (Englewood,CO) |
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