| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 7 | June-Reg | Frank Thomas | | 1B | 21 | 5/27/1968 | 6-5 | 270 | R | R | MLB | 1990-2008 | Auburn University |
| 2 | 37 | June-Reg | Don Sheppard | | OF | 18 | 5/2/1971 | 6-2 | 180 | R | R | AAA | | Pittsburg High School (Pittsburg,CA) |
| 3 | 67 | June-Reg | Todd Martin | | SS | | | | | | | A- | | Morehead High School (Eden,NC) |
| 4 | 93 | June-Reg | Dan Matznick | | P | 17 | 7/9/1971 | 6-2 | 190 | R | R | A+ | | Sterling High School (Sterling,IL) |
| 5 | 119 | June-Reg | Mike Eatinger | | 3B | 21 | 12/19/1967 | 6-1 | 185 | R | R | A+ | | University of California-Riverside |
| 6 | 145 | June-Reg | John Smith | | P | | | | | | | A- | | Garrett College |
| 7 | 171 | June-Reg | Mike Mongiello | | P | 21 | 1/19/1968 | 6-2 | 215 | R | R | AAA | | Fairleigh Dickinson University |
| 8 | 197** | June-Reg | John Sutherland | | P | 20 | 10/11/1968 | 6-2 | 185 | R | R | AAA | | UCLA |
| 9 | 223 | June-Reg | Kevin Tolar | | P | 18 | 1/28/1971 | 6-3 | 225 | R | L | MLB | 2000-2003 | Mosley High School (Panama City,FL) |
| 10 | 249 | June-Reg | Scotty Pugh | | 1B | | | | | | | AA | | Cooper High School (Abilene,TX) |
| 11 | 275 | June-Reg | Gregory Kobza | | 1B | 21 | 12/26/1967 | 6-4 | 218 | L | R | AA | | Texas Tech University |
| 12 | 301 | June-Reg | David Van Winkle | | p | | | | | | | A+ | | Northwestern University |
| 13 | 327 | June-Reg | Lance Sanders | | SS | | | | | | | A | | Hanover College |
| 14 | 353** | June-Reg | Keith Johns | | SS | 17 | 7/19/1971 | 6-1 | 175 | R | R | MLB | 1998-1998 | Sandalwood High School (Jacksonville,FL) |
| 15 | 379** | June-Reg | Doug Shields | | OF | 21 | 1/13/1968 | 6-0 | 180 | R | R | AA | | Southern Illinois University |
| 16 | 405 | June-Reg | Rollie Caridad | | p | | | | | | | A+ | | Westminster High School (Palmetto Bay,FL) |
| 17 | 431 | June-Reg | Scott Stevens | | p | | | | | | | A+ | | Brookdale Community College |
| 18 | 457 | June-Reg | Richard Long | | p | | | | | | | AAA | | University of Eastern Washington |
| 19 | 483 | June-Reg | Brian Keyser | | p | 22 | 10/31/1966 | 6-1 | 180 | R | R | MLB | 1995-1996 | Stanford University |
| 20 | 509 | June-Reg | Scott Thoma | | p | | | | | | | A | | Texas Christian University |
| 21 | 535 | June-Reg | Jorge Ruiz | | p | | | | | | | Rookie | | |
| 22 | 561 | June-Reg | James Robinson | | p | 22 | 4/16/1967 | 6-5 | 205 | R | R | Rookie | | Northwestern University |
| 23 | 587 | June-Reg | Scott Cepicky | | 1B | 22 | 7/29/1966 | 6-4 | 220 | L | R | AAA | | University of Wisconsin |
| 24 | 613 | June-Reg | Greg Perschke | | p | 21 | 8/3/1967 | 6-3 | 200 | R | R | AAA | | University of New Orleans |
| 25 | 639 | June-Reg | Kevin Conover | | p | | | | | | | Rookie | | Rutgers University |
| 26 | 665 | June-Reg | Randy Norris | | OF | 23 | 10/11/1965 | 5-9 | 165 | R | R | Rookie | | High Point University |
| 27 | 691 | June-Reg | Bobby Hunter | | p | | | | | | | AAA | | Mainland High School (Daytona Beach,FL) |
| 28 | 717 | June-Reg | Thomas Borgula | | p | | | | | | | Rookie | | Northwestern University |
| 29 | 743 | June-Reg | Dave Geeve | | p | 19 | 10/19/1969 | 6-3 | 190 | R | R | AAA | | Oakton Community College |
| 30 | 769** | June-Reg | John Reece | | OF | | | | | | | Rookie | | Jersey Village High School (Houston,TX) |
| 31 | 795 | June-Reg | Michael Potter | | p | | | | | | | - | | Potterville High School (Dimondale,MI) |
| 32 | 821 | June-Reg | Joe Borowski | | p | 18 | 5/4/1971 | 6-2 | 225 | R | R | MLB | 1995-2007 | Bayonne High School (Bayonne,NJ) |
| 33 | 847 | June-Reg | T.J. O'Donnell | | 2B-SS | 18 | 10/7/1970 | 6-0 | 180 | R | R | A+ | | Hazlet High School (Hazlet,NJ) |
| 34 | 873 | June-Reg | Dean Locklear | | p | | | | | | | AA | | Seminole Junior College |
| 35 | 899** | June-Reg | Chris Gump | | 3B | | | | | | | A | | Westwood High School (Mesa,AZ) |
| 36 | 925 | June-Reg | Jon French | | SS-2B | | | | | | | - | | Modesto Junior College |
| 37 | 951 | June-Reg | Richard Paschal | | p | | | | | | | - | | Coronado High School (Scottsdale,AZ) |
| 38 | 977 | June-Reg | Harry Durkin | | SS-2B | | | | | | | - | | |
| 39 | 1003 | June-Reg | Horace Gaither | | SS-2B | | | | | | | AAA | | Southern University |
| 40 | 1029 | June-Reg | Matt Klusener | | p | | | | | | | - | | Shawnee Heights High School (Topeka,KS) |
| 41 | 1055** | June-Reg | Bobby Reed | | p | 21 | 10/3/1967 | 6-5 | 210 | R | R | AA | | Mississippi State University |
| 42 | 1081 | June-Reg | Michael Davino | | p | 21 | 6/2/1968 | 6-3 | 210 | R | R | AAA | | University of South Carolina at Aiken |
| 43 | 1106 | June-Reg | Dan Monzon | | 3B-2b | | | | | | | A | | Pace University |
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