| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 6 | June-Reg | Barry Bonds | | OF | 20 | 7/24/1964 | 6-2 | 210 | L | L | MLB | 1986-2007 | Arizona State University |
| 2 | 47 | June-Reg | Damon Hansel | | C | | | | | | | A | | Granite Hills High School (El Cajon,CA) |
| 3 | 60 | June-Reg | Joe Klancnik | | P | | | | | | | A+ | | Niles West High School (Skokie,IL) |
| 4 | 86 | June-Reg | Robin Vaughn | | SS | | | | | | | Rookie | | Crenshaw High School (Los Angeles,CA) |
| 5 | 112 | June-Reg | Ondra Ford | | OF | 17 | 8/18/1967 | 6-2 | 180 | L | L | A+ | | Ontario High School (Ontario,CA) |
| 6 | 138 | June-Reg | Brett Gideon | | P | 21 | 8/8/1963 | 6-2 | 200 | R | R | MLB | 1987-1990 | University of Mary Hardin-Baylor |
| 7 | 164 | June-Reg | Tommy Gregg | | OF | 21 | 7/29/1963 | 6-1 | 190 | L | L | MLB | 1987-1997 | Wake Forest University |
| 8 | 190 | June-Reg | Larry Melton | | P | | | | | | | AAA | | University of Portland |
| 9 | 216 | June-Reg | Terry Wakefield | | OF | | | | | | | Rookie | | Guthrie High School (Guthrie,OK) |
| 10 | 242 | June-Reg | Jeff Cook | | OF | | | | | | | AAA | | Phillips University |
| 11 | 268 | June-Reg | Desmond Scioneaux | | 1B | | | | | | | Rookie | | Montclair High School (Montclair,CA) |
| 12 | 294 | June-Reg | Bill Sampen | | p | 22 | 1/18/1963 | 6-2 | 190 | R | R | MLB | 1990-1994 | MacMurray College |
| 13 | 320** | June-Reg | Brad Robinson | | OF-1B | | | | | | | A | | Seminole Junior College |
| 14 | 346 | June-Reg | Kyle Todd | | 3B | 22 | 2/22/1963 | 6-0 | 185 | R | R | AA | | Baylor University |
| 15 | 372 | June-Reg | Luis Ramos | | SS | | | | | | | - | | Georgia Southern University |
| 16 | 398 | June-Reg | Ronnell Daniefs | | OF | | | | | | | - | | Utica College |
| 17 | 424 | June-Reg | Brian Zanardelli | | p | | | | | | | - | | Robert Morris College (Ill.) |
| 18 | 450 | June-Reg | Juan McWilliams | | 3B | | | | | | | A | | Grambling State University |
| 19 | 476 | June-Reg | Richard Kiluk | | OF | | | | | | | A | | University of Lowell |
| 20 | 502 | June-Reg | John Shouse | | C | | | | | | | A- | | Cumberland Junior College (KY) |
| 21 | 528 | June-Reg | Ray Gambino | | SS | | | | | | | A | | Point Park College (Pa.) |
| 22 | 554 | June-Reg | Mark Koller | | p | | | | | | | A- | | Peabody High School (Pittsburgh,PA) |
| 23 | 580 | June-Reg | Ralph Denkenberger | | OF | | | | | | | A | | Loch Raven High School (Baltimore,MD) |
| 24 | 606 | June-Reg | Thomas Pierce | | SS | | | | | | | - | | Georgia Perimeter College |
| 25 | 632 | June-Reg | Robert Benkert | | C | | | | | | | A+ | | William Paterson University of New Jersey |
| 26 | 658 | June-Reg | Mark Oberholtzer | | p | | | | | | | A- | | Ohio Wesleyan University |
| 27 | 683 | June-Reg | Tony Mealy | | OF | | | | | | | A | | Fayetteville High School (Fayetteville,WV) |
| 28 | 708 | June-Reg | Kyle Channing | | p | | | 6-0 | 185 | L | L | A- | | Dallas Baptist University |
| 29 | 730 | June-Reg | Lawrence Brady | | OF | | | | | | | A- | | Coastal Carolina University |
| 30 | 751 | June-Reg | Brian Schaum | | SS | | | | | | | AA | | California University of Pennsylvania |
| 31 | 769 | June-Reg | Buster Lopes | | p | | | | | | | - | | University of Notre Dame |
| 32 | 783 | June-Reg | Greg Shirley | | OF | | | | | | | - | | Azusa Pacific University (Calif.) |
| 33 | 797 | June-Reg | Scott Berry | | OF | | | | | | | A- | | Cumberland Junior College (KY) |
| 34 | 809 | June-Reg | Page Odle | | Of | | | | | | | A+ | | Oral Roberts University |
| 35 | 817 | June-Reg | Doug Smallwood | | 3B | | | | | | | Rookie | | Thomas Johnson High School (Frederick,MD) |
| 36 | 822** | June-Reg | Tommy Shields | | SS | 20 | 8/14/1964 | 6-0 | 180 | L | R | MLB | 1992-1993 | University of Notre Dame |
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| 1 | 4** | June-Sec | Tommy Hinzo | | SS | 21 | 6/18/1964 | 5-10 | 170 | B | R | MLB | 1987-1989 | University of Arizona |
| 2 | 30** | June-Sec | Jason Bridges | | SS-3B | | | | | | | - | | McLennan Community College |
| 3 | 54 | June-Sec | Kirk Barry | | OF | | | | | | | A | | Mesa Community College |
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| 1 | 5** | Jan-Reg | Pat Gilbert | | OF | | | | | | | AA | | Columbia State Community College |
| 2 | 31 | Jan-Reg | Steve Taylor | | OF | | | | | | | Rookie | | Henry Clay High School (Lexington,KY) |
| 3 | 57** | Jan-Reg | David Miller | | P | | | | | | | AAA | | Camden County College |
| 4 | 83 | Jan-Reg | Mike Stevanus | | SS | | | | | | | A+ | | Valencia Community College |
| 5 | 109** | Jan-Reg | Troy Jackson | | OF | | | | | | | Rookie | | College of San Mateo |
| 6 | 135** | Jan-Reg | Mitchell Ferrick | | P | | | | | | | Rookie | | Santa Rosa Junior College |
| 7 | 160** | Jan-Reg | Barry Griffin | | P | | | | | | | A- | | North Idaho Junior College |
| 8 | 184 | Jan-Reg | Craig Heakins | | C | | | | | | | A | | Triton College |
| 9 | 208** | Jan-Reg | Derek Lee | | 3B | 18 | 7/28/1966 | 6-1 | 200 | L | R | MLB | 1993-1993 | Manatee Community College |
| 10 | 231 | Jan-Reg | James Warner | | P | | | | | | | - | | Allegany College of Maryland |
| 11 | 251 | Jan-Reg | Keith Swartzlander | | P | | | | | | | A | | Allegheny College |
| 12 | 268 | Jan-Reg | Tom Hoffman | | p | | | | | | | - | | Pensacola Junior College |
| 13 | 282** | Jan-Reg | John Vuz | | C | | | | | | | A+ | | Keystone College |
| 14 | 294** | Jan-Reg | Brian Warfel | | OF | | | | | | | A+ | | Labette Community College |
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| 1 | 19** | Jan-Sec | Greg Vaughn | | OF | 19 | 7/3/1965 | 6-0 | 202 | R | R | MLB | 1989-2003 | Sacramento City College |
| 2 | 45 | Jan-Sec | Ken Rahming | | OF | | | | | | | Rookie | | Miami-Dade College |
| 3 | 63 | Jan-Sec | Chris Ritter | | P | | | | | | | AA | | Baltimore City Community College |
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