| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2006 | 5 | 137 | June-Reg | Jason Godin | Kansas City Royals | P | AAA | 2003-2010 | C | Old Dominion University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 138 | June-Reg | Helder Velazquez | Colorado Rockies | SS | A+ | 2006-2012 | H | Puerto Rico Baseball Acad (Gurabo,PR) | SF | PR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 139 | June-Reg | Shawn O'Malley | Tampa Bay Rays | SS | AAA | 2006-2013 | H | Southridge (Kennewick,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 140 | June-Reg | Pat Bresnahan | Pittsburgh Pirates | P | AA | 2004-2012 | C | Arizona State University | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 141 | June-Reg | Nathan Adcock | Seattle Mariners | P | MLB | 2006-2013 | H | North Hardin (Elizabethtown,KY) | SF | KY | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 1 | 4 | 3.79 | 1 | 95 | 58 | 5 |
| 2006 | 5 | 142 | June-Reg | Scott Sizemore | Detroit Tigers | 2B | MLB | 2004-2013 | C | Virginia Commonwealth University | SF | VA | 511 | 29 | 1 | 14 | 70 | 5 | .239 | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 143 | June-Reg | Kyle Smit | Los Angeles Dodgers | P | AAA | 2006-2011 | H | Spanish Springs (Sparks,NV) | SF | NV | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 144 | June-Reg | Josh Ravin | Cincinnati Reds | P | AA | 2006-2013 | H | Chatsworth (Chatsworth,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 145 | June-Reg | Tyler Henson | Baltimore Orioles | SS | AAA | 2006-2013 | H | Tuttle (Tuttle,OK) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 146 | June-Reg | Michael McBryde | San Francisco Giants | CF | AAA | 2004-2011 | C | Florida Atlantic University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 147 | June-Reg | Hector Ambriz | Arizona Diamondbacks | P | MLB | 2003-2013 | C | UCLA | SF | CA | -- | -- | -- | -- | -- | -- | -- | 1 | 3 | 5.19 | 0 | 68 | 59 | 0 |
| 2006 | 5 | 148 | June-Reg | Chris Davis | Texas Rangers | 1B | MLB | 2006-2013 | C | Navarro College | SF | TX | 1520 | 79 | 3 | 77 | 222 | 7 | .258 | 1 | 0 | 0.00 | 0 | 2 | 2 | 0 |
| 2006 | 5 | 149 | June-Reg | Jeff Samardzija | Chicago Cubs | P | MLB | 2004-2013 | C | University of Notre Dame | SF | IN | 64 | 0 | 0 | 1 | 5 | 0 | .109 | 21 | 22 | 4.10 | 1 | 344 | 322 | 33 |
| 2006 | 5 | 150 | June-Reg | Luke Hopkins | Toronto Blue Jays | 1B | A- | 2005-2006 | C | New Mexico State University | SF | NM | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 151 | June-Reg | Cory Van Allen | Washington Nationals | P | AAA | 2004-2012 | C | Baylor University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 152 | June-Reg | Chris Errecart | Milwaukee Brewers | LF | AA | 2004-2010 | C | University of California | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 153 | June-Reg | Andy Underwood | San Diego Padres | P | A | 2006-2007 | C | Fresno State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 154 | June-Reg | Steve Holmes | New York Mets | P | NCAA | 2004-2006 | C | University of Rhode Island | SF | RI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 155 | June-Reg | Chris Hatcher | Florida Marlins | C | MLB | 2004-2013 | C | University of North Carolina at Wilmington | SF | NC | 7 | 0 | 0 | 0 | 0 | 0 | .000 | 0 | 0 | 5.40 | 0 | 25 | 18 | 0 |
| 2006 | 5 | 156 | June-Reg | Devin Shepherd ** | Minnesota Twins | RF | A+ | 2007-2012 | H | Oxnard (Oxnard,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 157 | June-Reg | Quintin Berry | Philadelphia Phillies | CF | MLB | 2005-2013 | C | San Diego State University | SF | CA | 291 | 10 | 6 | 2 | 29 | 21 | .258 | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 158 | June-Reg | Jermaine Mitchell | Oakland Athletics | CF | AAA | 2006-2013 | C | University of North Carolina-Greensboro | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 159 | June-Reg | Casey Hudspeth | Houston Astros | P | AA | 2004-2009 | C | University of South Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 160 | June-Reg | Kevin Gunderson | Atlanta Braves | P | AAA | 2004-2009 | C | Oregon State University | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 161 | June-Reg | Chris Archer | Cleveland Indians | P | MLB | 2006-2013 | H | Clayton (Clayton,NC) | SF | NC | 3 | 0 | 0 | 0 | 0 | 0 | .000 | 1 | 3 | 4.60 | 0 | 29 | 36 | 4 |
| 2006 | 5 | 162 | June-Reg | David Herndon | Los Angeles Angels | P | MLB | 2005-2012 | C | Florida Gulf Coast University | SF | FL | 7 | 0 | 0 | 0 | 0 | 0 | .000 | 2 | 8 | 3.85 | 1 | 117 | 76 | 0 |
| 2006 | 5 | 163 | June-Reg | Dustin Richardson | Boston Red Sox | P | MLB | 2003-2012 | C | Texas Tech University | SF | TX | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 3.31 | 0 | 16 | 12 | 0 |
| 2006 | 5 | 164 | June-Reg | George Kontos | New York Yankees | P | MLB | 2004-2013 | C | Northwestern University | SF | IL | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 2 | 1 | 2.54 | 0 | 50 | 50 | 0 |
| 2006 | 5 | 165 | June-Reg | John Shelby | Chicago White Sox | 2B | AAA | 2004-2012 | C | University of Kentucky | SF | KY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 5 | 166 | June-Reg | Shane Robinson | St. Louis Cardinals | CF | MLB | 2004-2013 | C | Florida State University | SF | FL | 198 | 9 | 0 | 3 | 17 | 2 | .242 | -- | -- | -- | -- | -- | -- | -- |