| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2006 | 46 | 1363 | June-Reg | Chase Lehr ** | Kansas City Royals | P | A- | 2008-2008 | H | Centennial (Peoria,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1364 | June-Reg | Damion Carter | Colorado Rockies | LF | - | C | University of Southern Mississippi | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 46 | 1365 | June-Reg | Candy Maldonado | Tampa Bay Rays | RF | - | C | Porterville College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 46 | 1366 | June-Reg | Ryan Groth ** | Pittsburgh Pirates | RF | A | 2006-2009 | C | Indian River State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1367 | June-Reg | Robbie Dominguez | Seattle Mariners | P | A | 2006-2008 | C | Cerritos College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1368 | June-Reg | Kent Williamson | Detroit Tigers | P | NCAA | 2008-2008 | C | Cowley College | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1369 | June-Reg | Ryan Aguayo | Los Angeles Dodgers | 2B | NCAA | 2008-2011 | H | Servite (Anaheim,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1370 | June-Reg | Jordan Tiegs | Cincinnati Reds | P | Ind | 2008-2009 | C | Sauk Valley Community College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1371 | June-Reg | Vincent DiFazio ** | Baltimore Orioles | C | A+ | 2005-2012 | C | Indian River State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1372 | June-Reg | Taylor Hammack | San Francisco Giants | P | NCAA | 2008-2011 | H | Angleton (Angleton,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1373 | June-Reg | Alvaro Garcia | Arizona Diamondbacks | P | - | C | Pima Community College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 46 | 1374 | June-Reg | Clifton Thomas | Texas Rangers | OF | Ind | 2011-2012 | H | El Cajon Valley (El Cajon,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1375 | June-Reg | Ryan Shook | Chicago Cubs | P | NCAA | 2009-2013 | H | Valley Christian (Cerritos,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1376 | June-Reg | Mace Thurman ** | Toronto Blue Jays | P | A+ | 2008-2012 | C | McLennan Community College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1377 | June-Reg | Jayson Brugman | Washington Nationals | SS | - | C | South Mountain Community College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 46 | 1378 | June-Reg | Aaron Johnson | Milwaukee Brewers | C | NCAA | 2008-2010 | C | Lethbridge Community College | SF | AB | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1379 | June-Reg | Kyle Johnson | New York Mets | P | RK | 2006-2007 | C | Chapman University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1380 | June-Reg | Mitch MacDonald | Florida Marlins | 3B | A- | 2007-2008 | C | Monterey Peninsula College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1381 | June-Reg | Richard Breton | Minnesota Twins | CF | - | H | Keystone (Keystone,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 46 | 1382 | June-Reg | Trayvone Johnson ** | Philadelphia Phillies | C | RK | 2009-2010 | H | Community Harvest (Los Angeles,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1383 | June-Reg | Joey Wong ** | Houston Astros | SS | AA | 2007-2013 | H | Sprague (Salem,OR) | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1384 | June-Reg | Tyler Musselwhite | Atlanta Braves | P | Ind | 2008-2009 | C | Chipola College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1385 | June-Reg | Dan Miltenberger | Cleveland Indians | P | A- | 2003-2006 | C | UCLA | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1386 | June-Reg | Ryan Lipkin ** | Los Angeles Angels | C | AAA | 2008-2013 | C | Solano Community College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1387 | June-Reg | Junior Rodriguez ** | Boston Red Sox | 3B | A- | 2010-2012 | H | Coral Gables (Coral Gables,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1388 | June-Reg | Jeff Ludlow | New York Yankees | P | NCAA | 2008-2008 | H | Palm Harbor University (Palm Harbor,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 46 | 1389 | June-Reg | Michael Cerda | Chicago White Sox | 3B | - | H | Beyer (Modesto,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 46 | 1390 | June-Reg | Robert Woodard ** | St. Louis Cardinals | P | AAA | 2004-2009 | C | University of North Carolina | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |