| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2006 | 33 | 977 | June-Reg | Harold Smith | Kansas City Royals | CF | - | H | Palmetto (Palmetto,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 33 | 978 | June-Reg | Drew Shetrone | Colorado Rockies | P | A- | 2006-2010 | C | Cumberland University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 979 | June-Reg | Brooks Lindsley ** | Tampa Bay Rays | 2B | A- | 2008-2009 | C | Mount Hood Community College | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 980 | June-Reg | Victor Alvarez | Pittsburgh Pirates | SS | AA | 2006-2008 | C | Cumberland University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 981 | June-Reg | Rob Harmon | Seattle Mariners | P | AAA | 2003-2008 | C | University of Arkansas-Little Rock | SF | AR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 982 | June-Reg | Kody Quick | Detroit Tigers | P | NCAA | 1985-2006 | C | University of Kansas | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 983 | June-Reg | Curt Bradley | Los Angeles Dodgers | 2B | RK | 2005-2007 | C | University of Northern Iowa | SF | IA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 984 | June-Reg | Justin Curry | Cincinnati Reds | P | - | H | Buford (Buford,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 33 | 985 | June-Reg | Andrew Conklin | Baltimore Orioles | P | RK | 2007-2008 | C | South Mountain Community College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 986 | June-Reg | Chris Siewert | San Francisco Giants | C | NCAA | 2004-2007 | C | University of Tennessee | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 987 | June-Reg | Osbek Castillo | Arizona Diamondbacks | P | AA | 2006-2007 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 33 | 988 | June-Reg | Eric Fry | Texas Rangers | RF | A+ | 2007-2010 | C | San Jacinto College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 989 | June-Reg | Brad Clipp | Chicago Cubs | P | A+ | 2006-2007 | C | Point Loma Nazarene University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 990 | June-Reg | Greg Lopez | Toronto Blue Jays | SS | NCAA | 2003-2006 | C | University of Notre Dame | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 991 | June-Reg | Tyler Moore ** | Washington Nationals | 1B | MLB | 2008-2013 | C | Meridian Community College | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 992 | June-Reg | Eric Newton | Milwaukee Brewers | 2B | RK | 2003-2008 | C | Santa Clara University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 993 | June-Reg | Sean Finefrock ** | San Diego Padres | P | A- | 2007-2010 | H | Blanchard (Blanchard,OK) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 994 | June-Reg | Teddy Dziuba | New York Mets | C | AA | 2006-2007 | C | Babson College | SF | MA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 995 | June-Reg | Eric Basurto | Florida Marlins | P | AA | 2007-2011 | C | Chabot College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 996 | June-Reg | Alberto Espinosa ** | Minnesota Twins | C | RK | 2008-2012 | H | Brito Miami Private Schoo (Miami,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 997 | June-Reg | Michael Deveaux | Philadelphia Phillies | SS | RK | 2006-2007 | C | Georgia College & State University | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 998 | June-Reg | Burke Lieppman | Oakland Athletics | 1B | - | H | Prescott (Prescott,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 33 | 999 | June-Reg | Codi Harshman | Houston Astros | CF | NCAA | 2007-2009 | H | Sabino (Tucson,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 1000 | June-Reg | Jordan Poirrier | Atlanta Braves | SS | NCAA | 2007-2011 | H | Riverside Academy (Reserve,LA) | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 1001 | June-Reg | Jarett Jackson | Cleveland Indians | LF | NCAA | 2008-2008 | H | Jefferson (Auburn,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 1002 | June-Reg | Wilberto Ortiz | Los Angeles Angels | SS | AAA | 2006-2012 | C | Dowling College | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 1003 | June-Reg | Jeffrey Rea ** | Boston Red Sox | 2B | A+ | 2004-2008 | C | Mississippi State University | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 1004 | June-Reg | Luke Trubee | New York Yankees | P | A | 2003-2007 | C | University of Dayton | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 1005 | June-Reg | Chris Ulrey | Chicago White Sox | CF | NCAA | 2009-2009 | H | New Palestine (New Palestine,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 33 | 1006 | June-Reg | Brian Schroeder | St. Louis Cardinals | P | A | 2004-2007 | C | UCLA | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |