| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2006 | 21 | 617 | June-Reg | Burke Baldwin | Kansas City Royals | P | A | 2006-2008 | C | Elgin Community College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 618 | June-Reg | Andy Graham | Colorado Rockies | P | AAA | 2004-2011 | C | University of California-Santa Barbara | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 619 | June-Reg | Joey Callender | Tampa Bay Rays | 2B | A+ | 2005-2010 | C | Texas Tech University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 620 | June-Reg | Kody Paul | Pittsburgh Pirates | P | NCAA | 2007-2007 | H | Glynn Academy (Brunswick,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 621 | June-Reg | Brent Gaphardt | Seattle Mariners | P | RK | 2005-2008 | C | University of Delaware | SF | DE | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 622 | June-Reg | Tom Thornton | Detroit Tigers | P | A- | 2003-2010 | C | University of Notre Dame | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 623 | June-Reg | Matt Berezay | Los Angeles Dodgers | CF | AA | 2005-2008 | C | Pacific | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 624 | June-Reg | Chris White | Cincinnati Reds | P | RK | 2006-2006 | C | Texas A&M University-Kingsville | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 625 | June-Reg | Luis Lopez | Baltimore Orioles | CF | RK | 2006-2007 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 21 | 626 | June-Reg | Steven Calicutt | San Francisco Giants | P | AA | 2003-2009 | C | East Tennessee State University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 627 | June-Reg | Sean Smith | Arizona Diamondbacks | 2B | RK | 2002-2006 | C | UCLA | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 628 | June-Reg | Brandt Walker ** | Texas Rangers | P | A | 2007-2010 | H | St. Stephen's Episcopal (Austin,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 629 | June-Reg | Taylor Parker | Chicago Cubs | P | RK | 2003-2009 | C | University of Missouri | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 630 | June-Reg | Ronald Lowe | Toronto Blue Jays | P | A | 2006-2010 | C | Saint Leo University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 631 | June-Reg | Christopher French | Washington Nationals | CF | A | 2006-2007 | C | New Mexico Junior College | SF | NM | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 632 | June-Reg | Jesse D'Amico | Milwaukee Brewers | C | RK | 2006-2007 | H | Mohawk (Bessemer,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 633 | June-Reg | Luke Cannon | San Diego Padres | RF | A- | 2005-2007 | C | Texas State University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 634 | June-Reg | Joel Wells | New York Mets | 1B | - | C | Abilene Christian University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 21 | 635 | June-Reg | Corey Madden | Florida Marlins | P | AAA | 2005-2012 | C | St. Mary's College of California | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 636 | June-Reg | Eric Santiago | Minnesota Twins | SS | A | 1982-2008 | C | Miami-Dade College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 637 | June-Reg | Jacob Dempsey | Philadelphia Phillies | OF | A- | 2003-2010 | C | Winthrop University | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 638 | June-Reg | Jake Smith | Oakland Athletics | C | A | 2003-2008 | C | East Carolina University | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 639 | June-Reg | Anthony Bello | Houston Astros | P | A | 2006-2011 | C | Nova Southeastern University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 640 | June-Reg | Jordan Brown ** | Atlanta Braves | P | NCAA | 2008-2008 | C | Meridian Community College | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 641 | June-Reg | John Gaub | Cleveland Indians | P | MLB | 2004-2012 | C | University of Minnesota | SF | MN | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 6.75 | 0 | 3 | 3 | 0 |
| 2006 | 21 | 642 | June-Reg | Joey Vincent | Los Angeles Angels | OF | NCAA | 2004-2007 | C | New Mexico State University | SF | NM | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 643 | June-Reg | Brian Steinocher | Boston Red Sox | P | A+ | 2006-2008 | C | Stephen F. Austin University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 644 | June-Reg | Russell Raley | New York Yankees | 2B | AA | 2003-2007 | C | University of Oklahoma | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 645 | June-Reg | Matt Inouye | Chicago White Sox | C | A | 2003-2009 | C | University of Hawaii | SF | HI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 21 | 646 | June-Reg | Mark Diapoules | St. Louis Cardinals | P | AA | 2007-2011 | H | Martin County (Stuart,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |