| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2006 | 43 | 1276 | June-Reg | Brennan Thorpe | Kansas City Royals | P | NCAA | 2008-2009 | C | Saddleback College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1277 | June-Reg | Bryan Jaeger | Colorado Rockies | RF | - | C | Louisiana State University-Eunice | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 43 | 1278 | June-Reg | Victor Ramos | Tampa Bay Rays | CF | NCAA | 2011-2011 | H | Miami Senior (Miami,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1279 | June-Reg | Devin Copley | Pittsburgh Pirates | P | RK | 2007-2007 | C | Florida Gulf Coast University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1280 | June-Reg | Clint Straka | Seattle Mariners | P | - | C | Northern Oklahoma College-Enid Campus | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 43 | 1281 | June-Reg | David Mattox | Detroit Tigers | P | - | C | Connors State College | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 43 | 1282 | June-Reg | Jordan Chambless ** | Los Angeles Dodgers | P | NCAA | 2005-2008 | C | Texas A&M University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1283 | June-Reg | Geraldo Leal | Cincinnati Reds | P | - | H | Mission (Mission,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 43 | 1284 | June-Reg | Jose Kianes | Baltimore Orioles | RF | RK | 2008-2009 | H | Martin County (Stuart,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1285 | June-Reg | Kevin Boggan ** | San Francisco Giants | P | A+ | 2005-2009 | C | Boston College | SF | MA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1286 | June-Reg | Jason Stidham ** | Arizona Diamondbacks | SS | A | 2007-2010 | H | Melbourne (Melbourne,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1287 | June-Reg | Shawn Sanford ** | Texas Rangers | P | AAA | 2007-2012 | H | Cinnaminson (Cinnaminson,NJ) | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1288 | June-Reg | Anthony Morel | Chicago Cubs | SS | NCAA | 2006-2009 | C | Riverside Community College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1289 | June-Reg | Nate Melek | Toronto Blue Jays | P | A- | 2005-2009 | C | University of New Mexico | SF | NM | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1290 | June-Reg | Cory Anderson | Washington Nationals | P | A- | 2006-2006 | C | U.S. Coast Guard Academy | SF | CT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1291 | June-Reg | D.J. Lidyard | Milwaukee Brewers | P | A | 2007-2007 | C | Lower Columbia Community College | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1292 | June-Reg | Jeffrey Ramirez | San Diego Padres | SS | NCAA | 2007-2007 | H | El Camino (South San Francisco,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1293 | June-Reg | Albert Cartwright ** | New York Mets | 2B | AA | 2007-2013 | H | American Heritage (Plantation,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1294 | June-Reg | William Jackel | Florida Marlins | P | RK | 2007-2011 | C | Tallahassee Community College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1295 | June-Reg | Francis Berry | Minnesota Twins | P | NCAA | 2007-2011 | H | First Colonial (Virginia Beach,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1296 | June-Reg | Yazy Arbelo ** | Philadelphia Phillies | 1B | AA | 2010-2013 | H | Carroll (Fort Pierce,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1297 | June-Reg | Greg Joseph | Houston Astros | LF | - | C | Mount San Antonio College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 43 | 1298 | June-Reg | L.V. Ware | Atlanta Braves | CF | AA | 2008-2012 | C | Northwest Florida State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1299 | June-Reg | Michael Pontius | Cleveland Indians | P | A+ | 2007-2011 | H | Holt (Wentzville,MO) | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1300 | June-Reg | Doug Brandt | Los Angeles Angels | P | AAA | 2005-2010 | C | Cal State San Bernardino | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1301 | June-Reg | Jeff Vincent | Boston Red Sox | CF | A- | 2003-2012 | C | Niagara University | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1302 | June-Reg | Eric Erickson ** | New York Yankees | P | A- | 2007-2012 | H | Sarasota (Sarasota,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1303 | June-Reg | Jordan Cheatham | Chicago White Sox | OF | A+ | 2007-2010 | H | Pike (Indianapolis,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 43 | 1304 | June-Reg | William Torres | St. Louis Cardinals | SS | - | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |