| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2004 | 1 | 20 | June-Reg | Trevor Plouffe | Minnesota Twins | SS | MLB | 2004-2013 | H | Crespi Carmelite (Encino,CA) | SF | CA | 749 | 38 | 2 | 34 | 92 | 4 | .231 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 1 | 22 | June-Reg | Glen Perkins | Minnesota Twins | P | MLB | 2003-2013 | C | University of Minnesota | SF | MN | 4 | 0 | 0 | 0 | 0 | 0 | .000 | 26 | 17 | 4.11 | 18 | 435 | 302 | 44 |
| 2004 | 1 | 25 | June-Reg | Kyle Waldrop | Minnesota Twins | P | MLB | 2004-2013 | H | Farragut (Knoxville,TN) | SF | TN | -- | -- | -- | -- | -- | -- | -- | 1 | 1 | 3.62 | 0 | 32 | 12 | 0 |
| 2004 | 1 | 35 | June-Reg | Matt Fox | Minnesota Twins | P | MLB | 2002-2012 | C | University of Central Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 4.91 | 0 | 7 | 0 | 1 |
| 2004 | 1 | 39 | June-Reg | Jay Rainville | Minnesota Twins | P | AA | 2004-2009 | H | Bishop Hendricken (Warwick,RI) | SF | RI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 2 | 61 | June-Reg | Anthony Swarzak | Minnesota Twins | P | MLB | 2004-2013 | H | Nova (Davie,FL) | SF | FL | 4 | 0 | 0 | 0 | 0 | 0 | .000 | 10 | 20 | 5.03 | 0 | 258 | 151 | 28 |
| 2004 | 3 | 91 | June-Reg | Eduardo Morlan | Minnesota Twins | P | AA | 2004-2012 | H | Coral Park (Miami,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 121 | June-Reg | Mark Robinson | Minnesota Twins | OF | A | 2004-2007 | H | Mountain View (El Monte,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 5 | 151 | June-Reg | Jeff Schoenbachler | Minnesota Twins | P | RK | 2004-2006 | H | Reno (Reno,NV) | SF | NV | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 6 | 181 | June-Reg | Patrick Bryant | Minnesota Twins | P | RK | 2004-2006 | H | Pensacola Catholic (Pensacola,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 7 | 211 | June-Reg | John Williams | Minnesota Twins | P | A | 2001-2005 | C | Middle Tennessee State University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 8 | 241 | June-Reg | Jay Sawatski | Minnesota Twins | P | AAA | 2001-2008 | C | University of Arkansas | SF | AR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 9 | 271 | June-Reg | J.P. Martinez | Minnesota Twins | P | AAA | 2003-2008 | C | University of New Orleans | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 10 | 301 | June-Reg | Jeremy Pickrel | Minnesota Twins | OF | A+ | 2002-2008 | C | Illinois State University | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 11 | 331 | June-Reg | Kyle Aselton | Minnesota Twins | P | AA | 2004-2011 | C | Oregon State University | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 12 | 361 | June-Reg | Shane Boyd | Minnesota Twins | P | NCAA | 2001-2004 | C | University of Kentucky | SF | KY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 13 | 391 | June-Reg | Walter Patton | Minnesota Twins | P | RK | 2005-2006 | C | Lincoln Land Community College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 14 | 421 | June-Reg | Javi Sanchez | Minnesota Twins | C | A+ | 2001-2007 | C | University of Notre Dame | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 15 | 451 | June-Reg | Juan Portes | Minnesota Twins | SS | AA | 2004-2010 | H | Malden (Malden,MA) | SF | MA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 16 | 481 | June-Reg | Matt Tolbert | Minnesota Twins | SS | MLB | 2001-2013 | C | University of Mississippi | SF | MS | 605 | 27 | 9 | 3 | 54 | 17 | .230 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 17 | 511 | June-Reg | Eammon Portice ** | Minnesota Twins | P | AA | 2005-2012 | H | Fort Lauderdale (Fort Lauderdale,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 18 | 541 | June-Reg | Josh Rose | Minnesota Twins | P | Ind | 2009-2010 | H | Mariner (Cape Coral,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 19 | 571 | June-Reg | Tate Casey | Minnesota Twins | P | - | H | Longview (Longview,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 20 | 601 | June-Reg | Tim Lahey | Minnesota Twins | C | AAA | 2001-2010 | C | Princeton University | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 21 | 631 | June-Reg | Joseph Abellera | Minnesota Twins | 3B | RK | 2004-2005 | H | Hopkins (Minnetonka,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 22 | 661 | June-Reg | Vincent Scarduzio ** | Minnesota Twins | P | Ind | 2008-2011 | H | Jupiter Community (Jupiter,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 23 | 691 | June-Reg | Tim Arnold | Minnesota Twins | P | - | H | Fallbrook (Fallbrook,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 24 | 721 | June-Reg | Garrett White | Minnesota Twins | P | A+ | 2006-2008 | C | San Jacinto College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 25 | 751 | June-Reg | Joe Welsh ** | Minnesota Twins | P | A | 2005-2008 | C | Grand Rapids Community College | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 26 | 781 | June-Reg | Deacon Burns | Minnesota Twins | OF | A+ | 2004-2009 | C | Northern State University | SF | SD | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 27 | 811 | June-Reg | Landon Burt | Minnesota Twins | OF | A | 2001-2005 | C | San Diego State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 28 | 841 | June-Reg | Aaron Craig | Minnesota Twins | P | A+ | 2005-2008 | H | Century (Rochester,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 29 | 871 | June-Reg | Ricky Prady | Minnesota Twins | OF | RK | 2005-2006 | H | Sebastian River (Sebastian,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 30 | 901 | June-Reg | Daniel Berg | Minnesota Twins | 3B | AA | 2005-2010 | C | Texarkana College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 31 | 931 | June-Reg | Jason Laird | Minnesota Twins | P | - | H | Henry County (McDonough,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 32 | 961 | June-Reg | Nolan Mulligan ** | Minnesota Twins | P | RK | 2006-2007 | C | Broward College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 33 | 991 | June-Reg | Sean Kalmen | Minnesota Twins | P | NCAA | 2005-2006 | H | Katella (Anaheim,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 34 | 1021 | June-Reg | Rene Tosoni ** | Minnesota Twins | OF | MLB | 2006-2013 | H | Riverside (Port Coquitlam,BC) | SF | BC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 35 | 1051 | June-Reg | Jeff Mousser | Minnesota Twins | P | RK | 2003-2004 | C | Arizona State University | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 36 | 1081 | June-Reg | John Thies | Minnesota Twins | P | NCAA | 2006-2007 | C | St. Louis Community College-Meramec | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 37 | 1111 | June-Reg | Gregory D'Oleo | Minnesota Twins | C | - | H | Puerto Rico Baseball Acad (Gurabo,PR) | SF | PR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 38 | 1141 | June-Reg | Josh Land | Minnesota Twins | OF | A | 2005-2007 | C | Northwest Florida State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 39 | 1171 | June-Reg | Danny Santiesteban | Minnesota Twins | OF | A+ | 2005-2012 | C | Palm Beach State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 40 | 1201 | June-Reg | Justin Otto ** | Minnesota Twins | P | - | H | Chandler (Chandler,OK) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 41 | 1231 | June-Reg | Eric Sweeney | Minnesota Twins | P | NCAA | 2005-2005 | H | Mount Carmel (San Diego,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 42 | 1260 | June-Reg | Greg Schilling | Minnesota Twins | P | - | C | Broward College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 43 | 1289 | June-Reg | Robbie Hebert | Minnesota Twins | P | RK | 2002-2005 | C | Nicholls State University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 44 | 1318 | June-Reg | Tony Joiner | Minnesota Twins | OF | - | H | Haines City (Haines City,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 45 | 1347 | June-Reg | Lance Loftin ** | Minnesota Twins | 3B | A+ | 2008-2009 | H | Connally (Austin,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 46 | 1376 | June-Reg | Matt Rizzotti ** | Minnesota Twins | 1B | AAA | 2005-2012 | H | Archbishop Molloy (Jamaica,NY) | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 47 | 1405 | June-Reg | Chris Petrie | Minnesota Twins | OF | Ind | 2006-2008 | C | Lake City Community College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 48 | 1433 | June-Reg | Ryne Nelson | Minnesota Twins | P | Ind | 2007-2009 | H | Dickinson (Dickinson,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 49 | 1461 | June-Reg | Nicholas Bleau | Minnesota Twins | P | - | C | Gulf Coast State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 50 | 1489 | June-Reg | Taylor Cameron ** | Minnesota Twins | P | A- | 2004-2008 | C | Cypress College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |