| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2004 | 4 | 102 | June-Reg | Daryl Jones | San Diego Padres | 1B | A | 2004-2012 | H | Westchester (Los Angeles,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 103 | June-Reg | Collin Mahoney | Detroit Tigers | P | A | 2002-2007 | C | Clemson University | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 104 | June-Reg | Aaron Hathaway | New York Mets | C | A+ | 2002-2005 | C | University of Washington | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 105 | June-Reg | Matt Spring | Tampa Bay Rays | C | AAA | 2004-2013 | C | Dixie State College of Utah | SF | UT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 106 | June-Reg | Josh Baker | Milwaukee Brewers | P | A+ | 2002-2007 | C | Rice University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 107 | June-Reg | Chuck Lofgren | Cleveland Indians | P | AAA | 2004-2012 | H | Junipero Serra (San Mateo,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 108 | June-Reg | Rafael Gonzalez | Cincinnati Reds | P | A+ | 2004-2009 | H | George Washington (New York,NY) | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 109 | June-Reg | Brad Bergesen | Baltimore Orioles | P | MLB | 2004-2012 | H | Foothill (Pleasanton,CA) | SF | CA | 9 | 0 | 0 | 0 | 0 | 0 | .222 | 19 | 25 | 4.61 | 0 | 424 | 225 | 59 |
| 2004 | 4 | 110 | June-Reg | Chris Iannetta | Colorado Rockies | C | MLB | 2002-2013 | C | University of North Carolina | SF | NC | 1650 | 78 | 10 | 72 | 262 | 8 | .236 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 111 | June-Reg | Brandon Boggs | Texas Rangers | OF | MLB | 2002-2013 | C | Georgia Tech | SF | GA | 326 | 18 | 4 | 10 | 43 | 4 | .209 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 112 | June-Reg | Joe Bauserman | Pittsburgh Pirates | P | A | 2004-2006 | H | Lincoln (Tallahassee,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 113 | June-Reg | Patrick White ** | Anaheim Angels | OF | - | H | Daphne (Daphne,AL) | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 4 | 114 | June-Reg | Collin Balester | Montreal Expos | P | MLB | 2004-2013 | H | Huntington Beach (Huntington Beach,CA) | SF | CA | 27 | 0 | 0 | 0 | 1 | 0 | .148 | 7 | 16 | 5.30 | 0 | 185 | 144 | 22 |
| 2004 | 4 | 115 | June-Reg | Nate Moore | Kansas City Royals | P | A+ | 2004-2006 | C | Troy University | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 116 | June-Reg | Ross Ohlendorf | Arizona Diamondbacks | P | MLB | 2002-2013 | C | Princeton University | SF | NJ | 122 | 0 | 0 | 1 | 4 | 0 | .082 | 18 | 32 | 5.10 | 0 | 441 | 312 | 73 |
| 2004 | 4 | 117 | June-Reg | Casey Janssen | Toronto Blue Jays | P | MLB | 2001-2013 | C | UCLA | SF | CA | 3 | 0 | 0 | 0 | 0 | 0 | .000 | 22 | 20 | 3.60 | 31 | 395 | 290 | 22 |
| 2004 | 4 | 118 | June-Reg | Javy Guerra | Los Angeles Dodgers | P | MLB | 2005-2013 | H | Ryan (Denton,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | 4 | 5 | 2.45 | 29 | 92 | 75 | 0 |
| 2004 | 4 | 119 | June-Reg | Lucas Harrell | Chicago White Sox | P | MLB | 2004-2013 | H | Ozark (Ozark,MO) | SF | MO | 62 | 0 | 0 | 0 | 1 | 0 | .145 | 12 | 13 | 3.93 | 0 | 236 | 170 | 37 |
| 2004 | 4 | 120 | June-Reg | Donnie Smith | St. Louis Cardinals | P | A+ | 2002-2011 | C | Old Dominion University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 121 | June-Reg | Mark Robinson | Minnesota Twins | OF | A | 2004-2007 | H | Mountain View (El Monte,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 122 | June-Reg | Louis Marson | Philadelphia Phillies | C | MLB | 2004-2013 | H | Coronado (Scottsdale,AZ) | SF | AZ | 765 | 39 | 4 | 5 | 60 | 16 | .220 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 123 | June-Reg | Rob Johnson | Seattle Mariners | C | MLB | 2004-2013 | C | University of Houston | SF | TX | 701 | 37 | 3 | 8 | 62 | 6 | .201 | 0 | 0 | 0.00 | 0 | 1 | 1 | 0 |
| 2004 | 4 | 124 | June-Reg | Lou Santangelo | Houston Astros | C | AAA | 2002-2012 | C | Clemson University | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 125 | June-Reg | Tommy Hottovy | Boston Red Sox | P | MLB | 2001-2013 | C | Wichita State University | SF | KS | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 4.05 | 0 | 13 | 8 | 0 |
| 2004 | 4 | 126 | June-Reg | Chris Shaver | Chicago Cubs | P | AAA | 2001-2009 | C | College of William and Mary | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 127 | June-Reg | Ryan Webb | Oakland Athletics | P | MLB | 2004-2013 | H | Clearwater Central Cathol (Clearwater,FL) | SF | FL | 2 | 0 | 0 | 0 | 0 | 0 | .000 | 11 | 9 | 3.45 | 0 | 196 | 138 | 0 |
| 2004 | 4 | 128 | June-Reg | Jamar Walton | Florida Marlins | OF | A+ | 2004-2012 | H | Greensville County (Emporia,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 129 | June-Reg | Jason Jones | New York Yankees | P | AAA | 2002-2010 | C | Liberty University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 130 | June-Reg | Clay Timpner | San Francisco Giants | OF | MLB | 2002-2011 | C | University of Central Florida | SF | FL | 2 | 0 | 0 | 0 | 0 | 0 | .000 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 131 | June-Reg | James Parr | Atlanta Braves | P | MLB | 2004-2010 | H | La Cueva (Albuquerque,NM) | SF | NM | 9 | 1 | 0 | 0 | 0 | 0 | .222 | 1 | 0 | 5.20 | 0 | 36 | 26 | 5 |