| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2004 | 3 | 72 | June-Reg | Billy Killian | San Diego Padres | C | AAA | 2004-2012 | H | Chippewa Hills (Remus,MI) | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 73 | June-Reg | Jeff Frazier | Detroit Tigers | OF | MLB | 2002-2012 | C | Rutgers University | SF | NJ | 23 | 1 | 0 | 0 | 1 | 0 | .217 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 74 | June-Reg | Gaby Hernandez | New York Mets | P | AAA | 2004-2012 | H | Belen Jesuit (Miami,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 75 | June-Reg | Wade Davis | Tampa Bay Rays | P | MLB | 2004-2013 | H | Lake Wales (Lake Wales,FL) | SF | FL | 5 | 0 | 0 | 0 | 0 | 0 | .400 | 28 | 22 | 3.94 | 0 | 459 | 341 | 64 |
| 2004 | 3 | 76 | June-Reg | Josh Wahpepah | Milwaukee Brewers | P | AA | 2004-2009 | C | Cowley College | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 77 | June-Reg | Scott Lewis | Cleveland Indians | P | MLB | 2002-2010 | C | Ohio State University | SF | OH | -- | -- | -- | -- | -- | -- | -- | 4 | 0 | 3.49 | 0 | 28 | 18 | 5 |
| 2004 | 3 | 78 | June-Reg | Craig Tatum | Cincinnati Reds | C | MLB | 2002-2012 | C | Mississippi State University | SF | MS | 269 | 8 | 0 | 1 | 22 | 2 | .223 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 79 | June-Reg | Jeff Fiorentino | Baltimore Orioles | C | MLB | 2002-2012 | C | Florida Atlantic University | SF | FL | 148 | 5 | 0 | 1 | 21 | 4 | .270 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 80 | June-Reg | Steve Register | Colorado Rockies | P | MLB | 2002-2010 | C | Auburn University | SF | AL | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 8.25 | 0 | 12 | 9 | 0 |
| 2004 | 3 | 81 | June-Reg | Michael Schlact | Texas Rangers | P | AA | 2004-2012 | H | Wheeler (Marietta,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 82 | June-Reg | Eddie Prasch | Pittsburgh Pirates | 3B | AA | 2004-2010 | H | Milton (Alpharetta,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 83 | June-Reg | Adam Lind | Toronto Blue Jays | 1B | MLB | 2003-2013 | C | University of South Alabama | SF | AL | 2652 | 146 | 9 | 117 | 412 | 5 | .265 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 84 | June-Reg | Ian Desmond | Montreal Expos | SS | MLB | 2004-2013 | H | Sarasota (Sarasota,FL) | SF | FL | 1704 | 94 | 13 | 47 | 199 | 64 | .271 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 85 | June-Reg | Josh Johnson | Kansas City Royals | SS | AAA | 2004-2013 | H | Middleton (Tampa,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 86 | June-Reg | Garrett Mock | Arizona Diamondbacks | P | MLB | 2003-2013 | C | University of Houston | SF | TX | 29 | 0 | 0 | 0 | 0 | 0 | .069 | 4 | 13 | 5.17 | 0 | 136 | 121 | 19 |
| 2004 | 3 | 87 | June-Reg | Danny Hill | Toronto Blue Jays | P | AA | 2003-2006 | C | University of Missouri | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 88 | June-Reg | Cory Dunlap | Los Angeles Dodgers | 1B | AAA | 2004-2007 | C | Contra Costa College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 89 | June-Reg | Grant Hansen | Chicago White Sox | P | NCAA | 2002-2004 | C | Oklahoma City University | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 90 | June-Reg | Eric Haberer | St. Louis Cardinals | P | AA | 2002-2007 | C | Southern Illinois University | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 91 | June-Reg | Eduardo Morlan | Minnesota Twins | P | AA | 2004-2012 | H | Coral Park (Miami,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 92 | June-Reg | J.A. Happ | Philadelphia Phillies | P | MLB | 2002-2013 | C | Northwestern University | SF | IL | 152 | 2 | 0 | 1 | 6 | 0 | .092 | 35 | 35 | 4.19 | 0 | 590 | 498 | 96 |
| 2004 | 3 | 93 | June-Reg | Matt Tuiasosopo | Seattle Mariners | SS | MLB | 2004-2013 | H | Woodinville (Woodinville,WA) | SF | WA | 193 | 8 | 1 | 5 | 15 | 0 | .176 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 94 | June-Reg | Jordan Parraz | Houston Astros | OF | AAA | 2002-2013 | C | College of Southern Nevada | SF | NV | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 95 | June-Reg | Andrew Dobies | Boston Red Sox | P | AAA | 2002-2012 | C | University of Virginia | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 96 | June-Reg | Mark Reed | Chicago Cubs | C | AAA | 2004-2012 | H | Bonita (La Verne,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 97 | June-Reg | Jason Windsor | Oakland Athletics | P | MLB | 1998-2008 | C | Cal State Fullerton | SF | CA | -- | -- | -- | -- | -- | -- | -- | 0 | 1 | 6.59 | 0 | 14 | 6 | 3 |
| 2004 | 3 | 98 | June-Reg | Greg Burns | Florida Marlins | OF | AAA | 2004-2011 | H | Walnut (Walnut,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 99 | June-Reg | Christian Garcia | New York Yankees | P | MLB | 2004-2012 | H | Gulliver Prep (Coral Gables,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 2.13 | 0 | 13 | 15 | 0 |
| 2004 | 3 | 100 | June-Reg | John Bowker | San Francisco Giants | OF | MLB | 2002-2012 | C | Long Beach State University | SF | CA | 574 | 25 | 5 | 17 | 73 | 2 | .232 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 101 | June-Reg | J.C. Holt | Atlanta Braves | 2B | AAA | 2002-2011 | C | Louisiana State University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |