| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2003 | 3 | 68 | June-Reg | Andrew Miller ** | Tampa Bay Rays | P | MLB | 2004-2013 | H | Buchholz (Gainesville,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 69 | June-Reg | Lou Palmisano | Milwaukee Brewers | C | AA | 2003-2010 | C | Broward College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 70 | June-Reg | Tony Giarratano | Detroit Tigers | SS | MLB | 2001-2006 | C | Tulane University | SF | LA | 42 | 0 | 0 | 1 | 4 | 1 | .143 | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 71 | June-Reg | Colt Morton | San Diego Padres | C | MLB | 2001-2012 | C | North Carolina State University | SF | NC | 16 | 0 | 0 | 0 | 1 | 0 | .062 | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 72 | June-Reg | Brian McFall | Kansas City Royals | 1B | AA | 2003-2011 | C | Chandler-Gilbert Community College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 73 | June-Reg | Jake Fox | Chicago Cubs | C | MLB | 2001-2012 | C | University of Michigan | SF | MI | 489 | 28 | 2 | 20 | 73 | 0 | .237 | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 74 | June-Reg | Chris Ray | Baltimore Orioles | P | MLB | 2001-2012 | C | College of William and Mary | SF | VA | -- | -- | -- | -- | -- | -- | -- | 18 | 19 | 4.10 | 51 | 281 | 230 | 0 |
| 2003 | 3 | 75 | June-Reg | Steve Lerud | Pittsburgh Pirates | C | MLB | 2004-2013 | H | Galena (Reno,NV) | SF | NV | 10 | 0 | 0 | 0 | 0 | 0 | .200 | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 76 | June-Reg | John Hudgins | Texas Rangers | P | AAA | 2001-2009 | C | Stanford University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 77 | June-Reg | Aaron Marsden | Colorado Rockies | P | AAA | 2002-2008 | C | University of Nebraska | SF | NE | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 78 | June-Reg | Ryan Garko | Cleveland Indians | C | MLB | 2000-2012 | C | Stanford University | SF | CA | 1552 | 75 | 3 | 55 | 250 | 0 | .275 | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 79 | June-Reg | Jake Stevens | Atlanta Braves | P | AAA | 2003-2011 | H | Cape Coral (Cape Coral,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 80 | June-Reg | Shaun Marcum | Toronto Blue Jays | P | MLB | 2001-2013 | C | Missouri State University | SF | MO | 107 | 4 | 0 | 1 | 8 | 0 | .131 | 57 | 36 | 3.76 | 1 | 917 | 746 | 149 |
| 2003 | 3 | 81 | June-Reg | Jose Ronda | Cincinnati Reds | SS | RK | 2003-2005 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2003 | 3 | 82 | June-Reg | Clint King | Chicago White Sox | OF | A | 2002-2005 | C | University of Southern Mississippi | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 83 | June-Reg | Jonathan Fulton | Florida Marlins | SS | AA | 2003-2011 | H | Washington (Danville,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 84 | June-Reg | Beau Vaughan | Boston Red Sox | P | AAA | 2002-2012 | C | Arizona State University | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 85 | June-Reg | Tim Moss | Philadelphia Phillies | 2B | AA | 2002-2006 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 86 | June-Reg | Ryan Feierabend | Seattle Mariners | P | MLB | 2003-2013 | H | Midview (Grafton,OH) | SF | OH | -- | -- | -- | -- | -- | -- | -- | 2 | 11 | 7.22 | 0 | 106 | 64 | 19 |
| 2003 | 3 | 87 | June-Reg | Kory Casto | Montreal Expos | OF | MLB | 2001-2010 | C | University of Portland | SF | OR | 217 | 12 | 0 | 2 | 19 | 1 | .194 | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 88 | June-Reg | Johnny Woodard | Minnesota Twins | 1B | A+ | 2003-2012 | C | Cosumnes River College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 89 | June-Reg | Drew Stubbs ** | Houston Astros | OF | MLB | 2004-2013 | H | Atlanta (Atlanta,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 90 | June-Reg | Sean Rodriguez | Anaheim Angels | SS | MLB | 2003-2013 | H | Braddock (Miami,FL) | SF | FL | 1209 | 61 | 7 | 28 | 122 | 32 | .225 | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 91 | June-Reg | Cory Van Allen ** | Los Angeles Dodgers | P | AAA | 2004-2012 | H | Clements School (Sugar Land,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 92 | June-Reg | Dustin Majewski | Oakland Athletics | OF | AAA | 2002-2009 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 93 | June-Reg | Brian Buscher | San Francisco Giants | 3B | MLB | 2002-2010 | C | University of South Carolina | SF | SC | 436 | 13 | 1 | 8 | 69 | 1 | .266 | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 94 | June-Reg | Tim Battle | New York Yankees | OF | A+ | 2003-2012 | H | McIntosh (Peachtree City,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 3 | 95 | June-Reg | Dennis Dove | St. Louis Cardinals | P | MLB | 2002-2007 | C | Georgia Southern University | SF | GA | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 15.00 | 0 | 3 | 1 | 0 |
| 2003 | 3 | 96 | June-Reg | Matt Chico | Arizona Diamondbacks | P | MLB | 2002-2012 | C | Palomar College | SF | CA | 63 | 0 | 0 | 0 | 3 | 0 | .159 | 7 | 15 | 4.95 | 0 | 220 | 128 | 40 |
| 2003 | 3 | 97 | June-Reg | Matt Harrison | Atlanta Braves | P | MLB | 2003-2013 | H | South Granville (Creedmoor,NC) | SF | NC | 16 | 0 | 0 | 0 | 0 | 0 | .000 | 48 | 30 | 4.08 | 2 | 624 | 381 | 94 |