| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2001 | 1 | 2 | June-Reg | Mark Prior | Chicago Cubs | P | MLB | 1999-2013 | C | USC | SF | CA | 204 | 10 | 0 | 1 | 13 | 0 | .201 | 42 | 29 | 3.51 | 0 | 657 | 757 | 106 |
| 2001 | 2 | 46 | June-Reg | Andy Sisco | Chicago Cubs | P | MLB | 2001-2012 | H | Eastlake (Sammamish,WA) | SF | WA | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 3 | 9 | 5.18 | 1 | 148 | 141 | 0 |
| 2001 | 3 | 78 | June-Reg | Ryan Theriot | Chicago Cubs | IF | MLB | 1999-2012 | C | Louisiana State University | SF | LA | 3246 | 138 | 18 | 17 | 257 | 121 | .281 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 4 | 108 | June-Reg | Ricky Nolasco | Chicago Cubs | P | MLB | 2001-2013 | H | Rialto (Rialto,CA) | SF | CA | 319 | 10 | 0 | 1 | 25 | 0 | .141 | 76 | 64 | 4.49 | 0 | 1113 | 911 | 179 |
| 2001 | 5 | 138 | June-Reg | Brendan Harris | Chicago Cubs | IF | MLB | 1999-2013 | C | College of William and Mary | SF | VA | 1587 | 95 | 7 | 29 | 158 | 5 | .260 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 6 | 168 | June-Reg | Adam Wynegar | Chicago Cubs | P | A+ | 2001-2003 | C | James Madison University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 7 | 198 | June-Reg | Sergio Mitre | Chicago Cubs | P | MLB | 2001-2011 | C | San Diego Community College | SF | CA | 80 | 4 | 0 | 0 | 2 | 0 | .137 | 13 | 30 | 5.21 | 1 | 455 | 265 | 64 |
| 2001 | 8 | 228 | June-Reg | Warren Hanna | Chicago Cubs | C | A | 2001-2002 | C | University of South Alabama | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 9 | 258 | June-Reg | Alan Bomer ** | Chicago Cubs | P | A- | 2002-2002 | C | Iowa State University | SF | IA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 10 | 288 | June-Reg | Corey Slavik | Chicago Cubs | IF | AAA | 1998-2006 | C | Wake Forest University | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 11 | 318 | June-Reg | Geovany Soto | Chicago Cubs | C-1B | MLB | 2001-2013 | H | -- | SF | 1972 | 118 | 4 | 82 | 289 | 2 | .248 | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 12 | 348 | June-Reg | Jason Blanton | Chicago Cubs | P | A+ | 1998-2009 | C | North Carolina State University | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 13 | 378 | June-Reg | Tony Garcia | Chicago Cubs | IF | A+ | 1999-2007 | C | Pepperdine University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 14 | 408 | June-Reg | Khalil Greene ** | Chicago Cubs | SS | MLB | 1999-2009 | C | Clemson University | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 15 | 438 | June-Reg | Kevin Hairr | Chicago Cubs | OF | A- | 2001-2001 | C | University of North Carolina at Wilmington | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 16 | 468 | June-Reg | Dwaine Bacon | Chicago Cubs | OF | AAA | 2001-2006 | C | Florida A&M University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 17 | 498 | June-Reg | Nick Martin | Chicago Cubs | P | AAA | 2001-2010 | C | Rice University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 18 | 528 | June-Reg | Steve Ellis | Chicago Cubs | P | A+ | 1998-2002 | C | Bradley University | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 19 | 558 | June-Reg | Mark Carter | Chicago Cubs | P | A+ | 2001-2003 | C | University of Alabama | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 20 | 588 | June-Reg | Joshua Arteaga | Chicago Cubs | IF | AAA | 2001-2007 | C | Virginia Commonwealth University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 21 | 618 | June-Reg | Brad Bouras | Chicago Cubs | IF | A+ | 1998-2004 | C | Columbus State University | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 22 | 648 | June-Reg | Jeff Carlsen | Chicago Cubs | P | A | 1998-2002 | C | University of Washington | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 23 | 678 | June-Reg | B.J. Benik | Chicago Cubs | P | AA | 1998-2003 | C | Seton Hall University | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 24 | 708 | June-Reg | Luis Reyes | Chicago Cubs | P | A+ | 2001-2002 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 25 | 738 | June-Reg | Eric Servais | Chicago Cubs | C | A- | 2001-2003 | C | University of Wisconsin-La Crosse | SF | WI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 26 | 768 | June-Reg | Jesse Krause | Chicago Cubs | Ind | 2002-2007 | H | Columbia City (Columbia City,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 27 | 798 | June-Reg | Chad Farr | Chicago Cubs | P | - | H | Christian Brothers (Memphis,TN) | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 28 | 828 | June-Reg | Tony Sipp ** | Chicago Cubs | P | MLB | 2002-2013 | H | Moss Point (Moss Point,MS) | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 29 | 858 | June-Reg | Rick Devinney | Chicago Cubs | C | RK | 2001-2002 | H | Western (Anaheim,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 30 | 888 | June-Reg | Kyle Dubois ** | Chicago Cubs | P | NCAA | 2005-2005 | H | Frank W. Cox (Virginia Beach,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 31 | 918 | June-Reg | Dan Foli | Chicago Cubs | P | AAA | 2001-2009 | C | Walters State Community College | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 32 | 948 | June-Reg | Jeff Larish ** | Chicago Cubs | OF-1B | MLB | 2002-2012 | H | McClintock (Tempe,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 33 | 978 | June-Reg | Brian Stavisky ** | Chicago Cubs | OF | AAA | 2000-2010 | C | University of Notre Dame | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 34 | 1008 | June-Reg | Charlie Isaacson ** | Chicago Cubs | P | AAA | 2002-2005 | C | University of Arkansas | SF | AR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 35 | 1038 | June-Reg | Justin McCarty | Chicago Cubs | NCAA | 2002-2002 | C | Wichita State University | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 36 | 1068 | June-Reg | Aaron O'Dell | Chicago Cubs | P | - | H | Bend (Bend,OR) | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 37 | 1098 | June-Reg | Edwar Gonzalez | Chicago Cubs | OF | AAA | 2002-2010 | C | Seminole State College of Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 38 | 1128 | June-Reg | Jeff Teasley | Chicago Cubs | A+ | 2002-2006 | H | Grossmont (El Cajon,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 39 | 1158 | June-Reg | Jesse Chavez ** | Chicago Cubs | P | MLB | 2002-2013 | H | Miller (Fontana,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 40 | 1188 | June-Reg | Matt Pagnozzi ** | Chicago Cubs | C | MLB | 2002-2013 | H | Highland (Gilbert,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 41 | 1217 | June-Reg | Wes Whisler ** | Chicago Cubs | MLB | 2002-2013 | H | Noblesville (Noblesville,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 42 | 1246 | June-Reg | Mark Jecmen ** | Chicago Cubs | A | 2002-2006 | H | Diamond Bar (Diamond Bar,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 43 | 1274 | June-Reg | Kevin Culpepper ** | Chicago Cubs | P | A | 2002-2007 | H | Stephens County (Toccoa,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 44 | 1302 | June-Reg | Jared Eichelberger | Chicago Cubs | P | A- | 2005-2007 | H | Marian Catholic (San Diego,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 45 | 1330 | June-Reg | Jamil Knight | Chicago Cubs | P | NCAA | 2004-2005 | C | Shelton State Community College | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 46 | 1358 | June-Reg | Chris Niesel ** | Chicago Cubs | P | AAA | 2002-2007 | H | St. Thomas Aquinas (Fort Lauderdale,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 47 | 1386 | June-Reg | Taylor Gartz | Chicago Cubs | NCAA | 2002-2004 | H | Clear Lake (Houston,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 48 | 1413 | June-Reg | Kevin Randel ** | Chicago Cubs | SS | AAA | 2000-2009 | C | Riverside Community College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 49 | 1439 | June-Reg | Mike Pete | Chicago Cubs | P | A+ | 2002-2006 | H | Armwood (Seffner,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 50 | 1464 | June-Reg | Patrick McIntyre ** | Chicago Cubs | C | A- | 2003-2003 | H | Vallivue (Caldwell,ID) | SF | ID | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |