| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2001 | 1 | 1 | June-Reg | Joe Mauer | Minnesota Twins | C | MLB | 2001-2013 | H | Cretin-Derham Hall (St. Paul,MN) | SF | MN | 3933 | 247 | 20 | 94 | 587 | 43 | .323 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 45 | June-Reg | Scott Tyler | Minnesota Twins | P | AA | 2001-2008 | H | Downington West (Downington,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 3 | 77 | June-Reg | Jose Morales | Minnesota Twins | SS | MLB | 2001-2012 | H | -- | SF | 218 | 12 | 0 | 0 | 21 | 0 | .289 | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 4 | 107 | June-Reg | Angel Garcia | Minnesota Twins | P | AAA | 2001-2010 | H | Nicolas Sevilla (Toa Alta,PR) | SF | PR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 5 | 137 | June-Reg | Jeremy Brown | Minnesota Twins | P | RK | 2001-2004 | C | University of Georgia | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 6 | 167 | June-Reg | Vince Serafini | Minnesota Twins | P | A | 1999-2002 | C | University of Evansville | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 7 | 197 | June-Reg | Matt Vorwald | Minnesota Twins | P | A+ | 1999-2003 | C | University of Illinois | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 8 | 227 | June-Reg | Jared Hemus | Minnesota Twins | P | A | 2001-2002 | C | Grossmont College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 9 | 257 | June-Reg | Dusty Gomon | Minnesota Twins | 1B | A+ | 2001-2004 | H | Terry Parker (Jacksonville,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 10 | 287 | June-Reg | Garrett Guzman | Minnesota Twins | OF | AAA | 2001-2010 | H | Green Valley (Henderson,NV) | SF | NV | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 11 | 317 | June-Reg | Josh Renick | Minnesota Twins | 2B | AA | 2001-2007 | C | Middle Tennessee State University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 12 | 347 | June-Reg | Kaulana Kuhaulua | Minnesota Twins | IF | AA | 2001-2005 | C | Long Beach State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 13 | 377 | June-Reg | Kevin Cameron | Minnesota Twins | P | MLB | 2001-2009 | C | Georgia Tech | SF | GA | 5 | 0 | 0 | 0 | 0 | 0 | .000 | 2 | 0 | 3.02 | 1 | 86 | 70 | 0 |
| 2001 | 14 | 407 | June-Reg | Ryan Anderson ** | Minnesota Twins | P | - | H | Gaither (Tampa,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 15 | 437 | June-Reg | Brett Lawson | Minnesota Twins | P | RK | 2001-2008 | C | Northwestern Oklahoma State University | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 16 | 467 | June-Reg | Brian Stitt ** | Minnesota Twins | P | AAA | 2002-2007 | H | Wellington Christian (Wellington,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 17 | 497 | June-Reg | Matt Macri ** | Minnesota Twins | SS | MLB | 2002-2011 | H | Dowling (West Des Moines,IA) | SF | IA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 18 | 527 | June-Reg | Robert Guzman | Minnesota Twins | OF | A | 1999-2001 | C | Cal State Fullerton | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 19 | 557 | June-Reg | Scott Whitrock | Minnesota Twins | OF | AA | 2001-2006 | C | Madison Area Technical College | SF | WI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 20 | 587 | June-Reg | Anthony Albano | Minnesota Twins | OF | Ind | 2002-2009 | H | Brother Rice (Chicago,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 21 | 617 | June-Reg | Felix Molina | Minnesota Twins | 2B | AAA | 2001-2012 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 22 | 647 | June-Reg | Ryan Smith | Minnesota Twins | C | A | 2001-2007 | C | Citrus College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 23 | 677 | June-Reg | Jake Mauer | Minnesota Twins | 2B | AA | 2001-2005 | H | Cretin-Derham Hall (St. Paul,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 24 | 707 | June-Reg | Bryan Kennedy | Minnesota Twins | C | AAA | 1998-2005 | C | University of California-Riverside | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 25 | 737 | June-Reg | Josh Johnson | Minnesota Twins | P | AAA | 2001-2012 | H | Ridgway (Ridgway,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 26 | 767 | June-Reg | John Herrera ** | Minnesota Twins | A+ | 2005-2007 | H | Redlands (Redlands,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 27 | 797 | June-Reg | Justin Elliott | Minnesota Twins | OF | AAA | 2002-2007 | H | Lake Gibson (Lakeland,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 28 | 827 | June-Reg | Brian Gates | Minnesota Twins | P | A | 2001-2002 | C | University of Tennessee | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 29 | 857 | June-Reg | Nick Blackburn | Minnesota Twins | P | MLB | 2002-2012 | C | Seminole State College | SF | OK | 12 | 0 | 0 | 0 | 0 | 0 | .083 | 43 | 55 | 4.85 | 0 | 819 | 388 | 137 |
| 2001 | 30 | 887 | June-Reg | Josh Daws | Minnesota Twins | P | A+ | 2000-2006 | C | Jacksonville University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 31 | 917 | June-Reg | Ben Thomas ** | Minnesota Twins | 3B | A+ | 2003-2008 | H | Rapid City Central (Rapid City,SD) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 32 | 947 | June-Reg | Jason Wilmes | Minnesota Twins | P | - | H | Somerset (Somerset,WI) | SF | WI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 33 | 977 | June-Reg | Ryan Gehring | Minnesota Twins | P | RK | 2004-2010 | H | Burlington Catholic Centr (Burlington,WI) | SF | WI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 34 | 1007 | June-Reg | Marshall Hendon | Minnesota Twins | NCAA | 2002-2005 | H | Christian Brothers (Sacramento,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 35 | 1037 | June-Reg | Bookie Gates ** | Minnesota Twins | 2B | A- | 1999-2002 | C | Washington State University | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 36 | 1067 | June-Reg | Kenny Huff | Minnesota Twins | 1B | A | 1999-2002 | C | University of Arizona | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 37 | 1097 | June-Reg | Shawn Tarkington | Minnesota Twins | P | RK | 1999-2001 | C | Seton Hall University | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 38 | 1127 | June-Reg | Matt Abram | Minnesota Twins | OF | A+ | 2000-2004 | C | University of Arizona | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 39 | 1157 | June-Reg | Nick Niedbalski | Minnesota Twins | P | RK | 2001-2004 | C | East Central Community College | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 40 | 1187 | June-Reg | Erik Lohse | Minnesota Twins | P | AA | 2001-2005 | C | Sacramento City College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 41 | 1216 | June-Reg | Ryan Spataro | Minnesota Twins | OF | A | 2001-2004 | H | St. Peter's Secondary Sch (Barrie,ON) | SF | ON | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 42 | 1245 | June-Reg | Patrick Tingley | Minnesota Twins | P | RK | 2001-2003 | C | Indiana State University | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 43 | 1273 | June-Reg | Jason Vargas ** | Minnesota Twins | MLB | 2002-2013 | H | Apple Valley (Apple Valley,CA) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | ||
| 2001 | 44 | 1301 | June-Reg | Ryan Hader | Minnesota Twins | P | RK | 2002-2004 | H | Belton (Belton,MO) | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 45 | 1329 | June-Reg | Joshua Smith | Minnesota Twins | RF | - | H | Canyon Springs (Moreno Valley,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 46 | 1357 | June-Reg | Mitch Pruemer | Minnesota Twins | NCAA | 2001-2005 | C | Rend Lake College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 47 | 1385 | June-Reg | Daniel Smith | Minnesota Twins | RF | - | H | Eau Gallie (Melbourne,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 48 | 1412 | June-Reg | William Guzman | Minnesota Twins | SS | - | H | Northwest Christian (Juana Diaz,PR) | SF | PR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 49 | 1438 | June-Reg | Jason Paul | Minnesota Twins | NCAA | 2001-2003 | C | Ball State University | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 50 | 1463 | June-Reg | Robert Strickland | Minnesota Twins | 2B | - | H | Frostproof (Frostproof,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |