| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2001 | 1 | 1 | June-Reg | Joe Mauer | Minnesota Twins | C | MLB | 2001-2013 | H | Cretin-Derham Hall (St. Paul,MN) | SF | MN | 3933 | 247 | 20 | 94 | 587 | 43 | .323 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 2 | June-Reg | Mark Prior | Chicago Cubs | P | MLB | 1999-2013 | C | USC | SF | CA | 204 | 10 | 0 | 1 | 13 | 0 | .201 | 42 | 29 | 3.51 | 0 | 657 | 757 | 106 |
| 2001 | 1 | 3 | June-Reg | Dewon Brazelton | Tampa Bay Rays | P | MLB | 2001-2010 | C | Middle Tennessee State University | SF | TN | 6 | 1 | 0 | 0 | 1 | 0 | .167 | 8 | 25 | 6.38 | 0 | 271 | 145 | 43 |
| 2001 | 1 | 4 | June-Reg | Gavin Floyd | Philadelphia Phillies | P | MLB | 2002-2013 | H | Mount Saint Joseph (Baltimore,MD) | SF | MD | 54 | 0 | 0 | 0 | 0 | 0 | .056 | 70 | 66 | 4.46 | 0 | 1127 | 878 | 182 |
| 2001 | 1 | 5 | June-Reg | Mark Teixeira | Texas Rangers | 3B | MLB | 2001-2013 | C | Georgia Tech | SF | GA | 5664 | 355 | 18 | 338 | 1101 | 21 | .279 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 6 | June-Reg | Josh Karp | Montreal Expos | P | AAA | 1999-2005 | C | UCLA | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 7 | June-Reg | Chris Smith | Baltimore Orioles | P | A | 1999-2005 | C | Cumberland University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 8 | June-Reg | John VanBenschoten | Pittsburgh Pirates | P | MLB | 1999-2011 | C | Kent State University | SF | OH | 21 | 1 | 0 | 1 | 2 | 0 | .095 | 2 | 13 | 9.20 | 0 | 90 | 65 | 19 |
| 2001 | 1 | 9 | June-Reg | Colt Griffin | Kansas City Royals | P | AA | 2001-2005 | H | Marshall (Marshall,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 10 | June-Reg | Chris Burke | Houston Astros | IF | MLB | 2001-2010 | C | University of Tennessee | SF | TN | 1267 | 71 | 6 | 23 | 111 | 40 | .239 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 11 | June-Reg | Kenny Baugh | Detroit Tigers | P | AAA | 1998-2009 | C | Rice University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 12 | June-Reg | Mike Jones | Milwaukee Brewers | P | AAA | 2001-2010 | H | Thunderbird (Phoenix,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 13 | June-Reg | Casey Kotchman | Anaheim Angels | IF | MLB | 2001-2013 | C | Seminole State College of Florida | SF | FL | 3051 | 157 | 7 | 71 | 387 | 14 | .262 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 14 | June-Reg | Jake Gautreau | San Diego Padres | IF | AAA | 1999-2008 | C | Tulane University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 15 | June-Reg | Gabe Gross | Toronto Blue Jays | OF | MLB | 1999-2010 | C | Auburn University | SF | AL | 1461 | 78 | 8 | 40 | 186 | 22 | .239 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 16 | June-Reg | Kris Honel | Chicago White Sox | P | AA | 2001-2011 | H | Providence Catholic (New Lenox,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 17 | June-Reg | Dan Denham | Cleveland Indians | P | AAA | 2001-2009 | H | Deer Valley (Antioch,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 18 | June-Reg | Aaron Heilman | New York Mets | P | MLB | 1998-2012 | C | University of Notre Dame | SF | IN | 47 | 0 | 0 | 0 | 1 | 0 | .021 | 35 | 46 | 4.40 | 16 | 630 | 548 | 25 |
| 2001 | 1 | 19 | June-Reg | Mike Fontenot | Baltimore Orioles | 2B | MLB | 2002-2013 | C | Louisiana State University | SF | LA | 1413 | 86 | 13 | 27 | 163 | 17 | .265 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 20 | June-Reg | Jeremy Sowers ** | Cincinnati Reds | P | MLB | 2002-2010 | H | Ballard (Louisville,KY) | SF | KY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 21 | June-Reg | Brad Hennessey | San Francisco Giants | P | MLB | 2001-2011 | C | Youngstown State University | SF | OH | 88 | 3 | 0 | 2 | 8 | 1 | .227 | 17 | 22 | 4.68 | 20 | 360 | 191 | 44 |
| 2001 | 1 | 22 | June-Reg | Jason Bulger | Arizona Diamondbacks | P | MLB | 2000-2012 | C | Valdosta State University | SF | GA | -- | -- | -- | -- | -- | -- | -- | 7 | 2 | 4.33 | 1 | 133 | 138 | 0 |
| 2001 | 1 | 23 | June-Reg | John-Ford Griffin | New York Yankees | OF | MLB | 1999-2010 | C | Florida State University | SF | FL | 23 | 3 | 0 | 2 | 9 | 0 | .304 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 24 | June-Reg | Macay McBride | Atlanta Braves | P | MLB | 2001-2010 | H | Screven County (Sylvania,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | 6 | 2 | 4.35 | 2 | 103 | 98 | 0 |
| 2001 | 1 | 25 | June-Reg | Bobby Crosby | Oakland Athletics | IF | MLB | 1999-2010 | C | Long Beach State University | SF | CA | 2559 | 146 | 8 | 62 | 276 | 34 | .236 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 26 | June-Reg | Jeremy Bonderman | Oakland Athletics | P | MLB | 2002-2013 | H | Pasco (Pasco,WA) | SF | WA | 28 | 0 | 0 | 0 | 0 | 0 | .036 | 67 | 77 | 4.89 | 0 | 1176 | 929 | 193 |
| 2001 | 1 | 27 | June-Reg | Alan Horne ** | Cleveland Indians | P | AAA | 2002-2011 | H | Marianna (Marianna,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 28 | June-Reg | Justin Pope | St. Louis Cardinals | P | AAA | 1999-2008 | C | University of Central Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 29 | June-Reg | Josh Burrus | Atlanta Braves | 3B | AAA | 2001-2010 | H | Wheeler (Marietta,GA) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 1 | 30 | June-Reg | Noah Lowry | San Francisco Giants | P | MLB | 2001-2007 | C | Pepperdine University | SF | CA | 197 | 10 | 0 | 2 | 14 | 0 | .178 | 40 | 31 | 4.03 | 0 | 618 | 420 | 100 |
| 2001 | 1 | 31 | June-Reg | Bryan Bass | Baltimore Orioles | SS | AA | 2001-2009 | H | Seminole (Seminole,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 32 | June-Reg | Mike Woods | Detroit Tigers | IF | AA | 2001-2010 | C | Southern University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 33 | June-Reg | Jeff Mathis | Anaheim Angels | C | MLB | 2001-2013 | H | Marianna (Marianna,FL) | SF | FL | 1412 | 61 | 1 | 34 | 166 | 9 | .198 | 0 | 0 | 9.00 | 0 | 2 | 0 | 0 |
| 2001 | 1 | 34 | June-Reg | Bronson Sardinha | New York Yankees | IF | MLB | 2001-2011 | H | Kamehameha (Honolulu,HI) | SF | HI | 9 | 0 | 0 | 0 | 2 | 0 | .333 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 35 | June-Reg | J.D. Martin | Cleveland Indians | P | MLB | 2001-2013 | H | Burroughs (Ridgecrest,CA) | SF | CA | 37 | 1 | 0 | 0 | 0 | 0 | .162 | 6 | 9 | 4.32 | 0 | 125 | 68 | 24 |
| 2001 | 1 | 36 | June-Reg | Michael Garciaparra | Seattle Mariners | SS | AAA | 2002-2010 | H | Don Bosco (La Habra Heights,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 37 | June-Reg | John Rheinecker | Oakland Athletics | P | MLB | 2000-2008 | C | Missouri State University | SF | MO | -- | -- | -- | -- | -- | -- | -- | 8 | 9 | 5.65 | 0 | 121 | 68 | 20 |
| 2001 | 1 | 38 | June-Reg | David Wright | New York Mets | 3B | MLB | 2001-2013 | H | Hickory (Chesapeake,VA) | SF | VA | 4742 | 322 | 19 | 204 | 818 | 166 | .301 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 39 | June-Reg | Wyatt Allen | Chicago White Sox | P | AAA | 2001-2006 | C | University of Tennessee | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 40 | June-Reg | Richard Lewis | Atlanta Braves | IF | AAA | 2001-2008 | C | Georgia Tech | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 41 | June-Reg | Todd Linden | San Francisco Giants | OF | MLB | 1999-2013 | C | Louisiana State University | SF | LA | 502 | 22 | 3 | 8 | 36 | 8 | .231 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 42 | June-Reg | Jon Skaggs | New York Yankees | P | AA | 1998-2006 | C | Rice University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 43 | June-Reg | Mike Conroy | Cleveland Indians | OF | A+ | 2001-2012 | H | Boston College (Dorchester,MA) | SF | MA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 1 | 44 | June-Reg | Jayson Nix | Colorado Rockies | IF | MLB | 2001-2013 | H | Midland (Midland,TX) | SF | TX | 955 | 46 | 1 | 34 | 102 | 22 | .214 | -- | -- | -- | -- | -- | -- | -- |