| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2000 | 1 | 1 | June-Reg | Adrian Gonzalez | Florida Marlins | 1B | MLB | 2000-2013 | H | Eastlake (Chula Vista,CA) | SF | CA | 4426 | 278 | 12 | 213 | 750 | 4 | .294 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 2 | June-Reg | Adam Johnson | Minnesota Twins | P | MLB | 1998-2009 | C | Cal State Fullerton | SF | CA | 2 | 0 | 0 | 0 | 0 | 0 | .000 | 1 | 3 | 10.25 | 0 | 26 | 17 | 4 |
| 2000 | 1 | 3 | June-Reg | Lou Montanez | Chicago Cubs | IF | MLB | 2000-2012 | H | Coral Park (Miami,FL) | SF | FL | 305 | 15 | 1 | 5 | 32 | 1 | .223 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 4 | June-Reg | Mike Stodolka | Kansas City Royals | P | AAA | 2000-2008 | H | Centennial (Corona,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 5 | June-Reg | Justin Wayne | Montreal Expos | P | MLB | 1998-2005 | C | Stanford University | SF | CA | 12 | 0 | 0 | 0 | 0 | 0 | .000 | 5 | 8 | 6.13 | 0 | 62 | 37 | 8 |
| 2000 | 1 | 6 | June-Reg | Rocco Baldelli | Tampa Bay Rays | OF | MLB | 2000-2010 | H | Bishop Hendricken (Warwick,RI) | SF | RI | 1910 | 99 | 18 | 60 | 262 | 60 | .278 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 7 | June-Reg | Matt Harrington ** | Colorado Rockies | P | Ind | 2001-2007 | H | Palmdale (Palmdale,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 8 | June-Reg | Matt Wheatland | Detroit Tigers | P | A | 2000-2006 | H | Rancho Bernardo (San Diego,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 9 | June-Reg | Mark Phillips | San Diego Padres | P | A+ | 2000-2007 | H | Hanover (Hanover,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 10 | June-Reg | Joe Torres | Anaheim Angels | P | AAA | 2000-2012 | H | Gateway (Kissimmee,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 11 | June-Reg | Dave Krynzel | Milwaukee Brewers | OF | MLB | 2000-2009 | H | Green Valley (Henderson,NV) | SF | NV | 48 | 1 | 0 | 0 | 3 | 0 | .187 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 12 | June-Reg | Joe Borchard | Chicago White Sox | OF | MLB | 1998-2011 | C | Stanford University | SF | CA | 716 | 23 | 2 | 26 | 77 | 5 | .205 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 13 | June-Reg | Shaun Boyd | St. Louis Cardinals | IF | AAA | 2000-2008 | H | Vista (Vista,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 14 | June-Reg | Beau Hale | Baltimore Orioles | P | AA | 1998-2007 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 15 | June-Reg | Chase Utley | Philadelphia Phillies | IF | MLB | 1999-2013 | C | UCLA | SF | CA | 4434 | 273 | 36 | 199 | 739 | 121 | .288 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 16 | June-Reg | Billy Traber | New York Mets | P | MLB | 1998-2010 | C | Loyola Marymount University | SF | CA | 21 | 0 | 0 | 0 | 1 | 0 | .048 | 12 | 14 | 5.65 | 0 | 215 | 152 | 28 |
| 2000 | 1 | 17 | June-Reg | Ben Diggins | Los Angeles Dodgers | P | MLB | 1999-2006 | C | University of Arizona | SF | AZ | 7 | 0 | 0 | 0 | 0 | 0 | .143 | 0 | 4 | 8.62 | 0 | 24 | 15 | 5 |
| 2000 | 1 | 18 | June-Reg | Miguel Negron | Toronto Blue Jays | OF | AAA | 2000-2012 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 1 | 19 | June-Reg | Sean Burnett | Pittsburgh Pirates | P | MLB | 2000-2013 | H | Wellington Christian (Wellington,FL) | SF | FL | 29 | 1 | 0 | 0 | 0 | 0 | .069 | 15 | 23 | 3.58 | 10 | 362 | 267 | 13 |
| 2000 | 1 | 20 | June-Reg | Chris Bootcheck | Anaheim Angels | P | MLB | 1998-2013 | C | Auburn University | SF | AL | 2 | 0 | 0 | 0 | 0 | 0 | .000 | 3 | 7 | 6.54 | 1 | 147 | 105 | 3 |
| 2000 | 1 | 21 | June-Reg | Boof Bonser | San Francisco Giants | P | MLB | 2000-2013 | H | Gibbs (St. Petersburg,FL) | SF | FL | 6 | 0 | 0 | 0 | 0 | 0 | .000 | 19 | 25 | 5.18 | 0 | 417 | 334 | 60 |
| 2000 | 1 | 22 | June-Reg | Phillip Dumatrait | Boston Red Sox | P | MLB | 2000-2011 | C | Bakersfield College | SF | CA | 27 | 0 | 0 | 0 | 1 | 0 | .037 | 4 | 13 | 6.20 | 1 | 151 | 97 | 17 |
| 2000 | 1 | 23 | June-Reg | David Espinosa | Cincinnati Reds | SS | AAA | 2001-2012 | H | Gulliver Prep (Coral Gables,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 24 | June-Reg | Blake Williams | St. Louis Cardinals | P | A+ | 1998-2006 | C | Texas State University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 25 | June-Reg | Scott Heard | Texas Rangers | C | A+ | 2000-2003 | H | Rancho Bernardo (San Diego,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 26 | June-Reg | Corey Smith | Cleveland Indians | IF | AAA | 2000-2012 | H | Piscataway (Piscataway,NJ) | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 27 | June-Reg | Robert Stiehl | Houston Astros | C | AA | 2000-2007 | C | El Camino College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 28 | June-Reg | Dave Parrish | New York Yankees | C | AAA | 1998-2008 | C | University of Michigan | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 29 | June-Reg | Adam Wainwright | Atlanta Braves | P | MLB | 2000-2013 | H | Glynn Academy (Brunswick,GA) | SF | GA | 367 | 18 | 1 | 6 | 27 | 0 | .204 | 80 | 48 | 3.15 | 3 | 1073 | 908 | 151 |
| 2000 | 1 | 30 | June-Reg | Scott Thorman | Atlanta Braves | IF | MLB | 2000-2012 | H | Preston (Cambridge,ON) | SF | ON | 415 | 29 | 0 | 16 | 50 | 2 | .222 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 31 | June-Reg | Aaron Heilman ** | Minnesota Twins | P | MLB | 1998-2012 | C | University of Notre Dame | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 32 | June-Reg | Tripper Johnson | Baltimore Orioles | 3B | AA | 2000-2007 | H | Newport (Bellevue,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 33 | June-Reg | Dustin McGowan | Toronto Blue Jays | P | MLB | 2000-2011 | H | Long County (Ludowici,GA) | SF | GA | 10 | 0 | 0 | 0 | 0 | 0 | .200 | 20 | 24 | 4.80 | 0 | 375 | 305 | 60 |
| 2000 | 1 | 34 | June-Reg | Dustin Moseley | Cincinnati Reds | P | MLB | 2001-2012 | H | Arkansas (Texarkana,AR) | SF | AR | 30 | 0 | 0 | 0 | 0 | 0 | .133 | 15 | 21 | 4.67 | 0 | 358 | 199 | 53 |
| 2000 | 1 | 35 | June-Reg | Tyrell Godwin ** | Texas Rangers | CF | MLB | 1998-2007 | C | University of North Carolina | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 36 | June-Reg | Bob Keppel | New York Mets | P | MLB | 2000-2012 | H | De Smet Jesuit (Creve Coeur,MO) | SF | MO | 2 | 0 | 0 | 0 | 0 | 0 | .000 | 1 | 5 | 5.36 | 0 | 92 | 53 | 6 |
| 2000 | 1 | 37 | June-Reg | Derek Thompson | Cleveland Indians | P | MLB | 2000-2005 | H | Land O'Lakes (Land O'Lakes,FL) | SF | FL | 4 | 0 | 0 | 0 | 0 | 0 | .000 | 0 | 0 | 3.50 | 0 | 18 | 13 | 3 |
| 2000 | 1 | 38 | June-Reg | Kelly Johnson | Atlanta Braves | P | MLB | 2000-2013 | H | Westwood (Austin,TX) | SF | TX | 3298 | 179 | 36 | 108 | 390 | 72 | .255 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 39 | June-Reg | Chad Hawkins | Texas Rangers | P | A+ | 1999-2002 | C | Baylor University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 1 | 40 | June-Reg | Aaron Herr | Atlanta Braves | IF | AAA | 2000-2011 | H | Hempfield (Landisville,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |