| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1999 | 40 | 1195 | June-Reg | Peter Bonifas | Tampa Bay Rays | P | - | H | Marquette (Bellevue,IA) | SF | IA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1196 | June-Reg | Matt Krabbe | Florida Marlins | NCAA | 2001-2002 | C | Triton College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1197 | June-Reg | Frank Arteaga ** | Detroit Tigers | P | A | 2001-2003 | H | Roosevelt (Los Angeles,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1198 | June-Reg | Aaron Sobieraj ** | Arizona Diamondbacks | 2B | A+ | 2000-2004 | H | Dunedin (Dunedin,FL) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1199 | June-Reg | Richard Smart | Minnesota Twins | P | A | 2000-2002 | C | Gulf Coast State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1200 | June-Reg | Wes Cain | Montreal Expos | Ind | 2005-2006 | H | Marietta (Marietta,OK) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1201 | June-Reg | Jason Fransz ** | Kansas City Royals | OF | A+ | 2002-2006 | H | Arlington (Riverside,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1202 | June-Reg | Seth Hill ** | Pittsburgh Pirates | A+ | 2002-2005 | H | Sandwich (Sandwich,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1203 | June-Reg | Jared Joaquin | Oakland Athletics | P | NCAA | 2007-2007 | C | Lower Columbia Community College | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1204 | June-Reg | Jefferson House | Milwaukee Brewers | P | RK | 1999-1999 | C | Stetson University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1205 | June-Reg | Jeff Thompson | Seattle Mariners | - | H | Torrance (Torrance,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | ||
| 1999 | 40 | 1206 | June-Reg | Lawrence Alexander | Philadelphia Phillies | OF | RK | 2000-2001 | H | Chandler (Chandler,OK) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1207 | June-Reg | Matt Roy | Baltimore Orioles | P | - | H | Johnstown-Monroe (Johnstown,OH) | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1208 | June-Reg | Matt Allen | Cincinnati Reds | NCAA | 2001-2002 | C | Vernon College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1209 | June-Reg | Jeremy Castillo | Chicago White Sox | OF | - | H | Southridge (Miami,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1210 | June-Reg | Nicholas Gor ** | Colorado Rockies | P | A+ | 2004-2004 | H | Esperanza (Anaheim,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1211 | June-Reg | Ryan Smith | Anaheim Angels | P | - | C | Chipola College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1212 | June-Reg | Ronnie Corona ** | St. Louis Cardinals | P | AA | 1998-2004 | C | Cypress College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1213 | June-Reg | Brian Mitchell | Toronto Blue Jays | 3B | RK | 1996-1999 | C | University of Iowa | SF | IA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1214 | June-Reg | Michael Pelsnik | Los Angeles Dodgers | P | - | H | Horizon (Scottsdale,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1215 | June-Reg | Josh Hollingsworth | Texas Rangers | SS-3B | A+ | 1999-2007 | C | St. Petersburg College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1216 | June-Reg | Cory Harris | New York Mets | OF | A+ | 1999-2009 | C | Pensacola State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 40 | 1217 | June-Reg | Neil Dudkowski | Cleveland Indians | P | - | C | Lassen Community College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1218 | June-Reg | Travis Veracka ** | San Francisco Giants | NCAA | 1999-2000 | C | University of Massachusetts | SF | MA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1219 | June-Reg | Anthony Bass | Boston Red Sox | LF | - | H | Booker T. Washington (Tulsa,OK) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1220 | June-Reg | Justin Valente | Chicago Cubs | CF | - | C | Norwalk Community College | SF | CT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1221 | June-Reg | Jonathan Habrack | New York Yankees | P | - | H | Dallas (Shavertown,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1222 | June-Reg | Jared Vance | San Diego Padres | P | - | H | Connorsville (Connorsville,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1223 | June-Reg | Darrick Bingham | Houston Astros | P | - | C | Canada College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 40 | 1224 | June-Reg | Josh Parker ** | Atlanta Braves | P | AAA | 2001-2006 | H | Thompson (Alabaster,AL) | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |