| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1999 | 35 | 1045 | June-Reg | Kevin O'Brien | Tampa Bay Rays | 1B | A- | 2000-2002 | H | Tarpon Springs (Tarpon Springs,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1046 | June-Reg | Enrique Mendieta | Florida Marlins | CF | RK | 1999-1999 | C | Norfolk State University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1047 | June-Reg | Dennis Wyrick ** | Detroit Tigers | 3B | A- | 2000-2003 | H | Bishop Amat (La Puente,CA) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1048 | June-Reg | James Wollscheid | Arizona Diamondbacks | P | RK | 1999-2002 | C | MacMurray College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1049 | June-Reg | Jason Richardson | Minnesota Twins | P | AAA | 1999-2011 | C | Polk State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1050 | June-Reg | Todd Johannes | Montreal Expos | AAA | 1996-2002 | C | University of Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1051 | June-Reg | Marcus Wyatt | Kansas City Royals | RF-CF | - | H | Fontana (Fontana,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1052 | June-Reg | Ramonzo Douglas | Pittsburgh Pirates | 1B | RK | 1999-1999 | C | University of Louisiana at Lafayette | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1053 | June-Reg | Darvin Withers | Oakland Athletics | P | AA | 2000-2003 | C | Spartanburg Methodist College | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1054 | June-Reg | Jeffery Kenney | Milwaukee Brewers | SS | A+ | 1999-2001 | C | University of Richmond | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1055 | June-Reg | Brian McDevitt | Seattle Mariners | P | - | H | Waubonsie Valley (Aurora,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1056 | June-Reg | Chris Herman | Philadelphia Phillies | SS | - | C | Mount San Antonio College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1057 | June-Reg | Kelvin Pickering | Baltimore Orioles | C | RK | 1999-2001 | H | King (Tampa,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1058 | June-Reg | Evan Conley ** | Cincinnati Reds | C | AA | 2000-2008 | H | Manatee (Bradenton,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1059 | June-Reg | Greg Sandifer | Chicago White Sox | P | - | C | Palomar College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1060 | June-Reg | Don Tolen | Colorado Rockies | NCAA | 2000-2000 | H | Orange Glen (Escondido,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1061 | June-Reg | Craig Glysch | Anaheim Angels | A- | 1999-1999 | C | University of Wisconsin | SF | WI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1062 | June-Reg | Aaron Dinkel | St. Louis Cardinals | P | A- | 1999-2000 | C | College of Eastern Utah | SF | UT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1063 | June-Reg | Matt Bimeal | Toronto Blue Jays | P | AA | 2000-2004 | H | Conemaugh Township Area (Davidsville,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1064 | June-Reg | Kegan O'toole | Los Angeles Dodgers | C | - | H | Jackson (Mill Creek,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1065 | June-Reg | Ed Erickson | Texas Rangers | NCAA | 2000-2000 | C | University of Washington | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1066 | June-Reg | Jamie Gonzales | New York Mets | P | Ind | 2000-2004 | C | Porterville College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1067 | June-Reg | Mike Byrd | Cleveland Indians | P | A | 1999-2000 | C | Vanderbilt University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1068 | June-Reg | Robert Lorona | San Francisco Giants | SS | - | H | Hayden (Winkelman,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1069 | June-Reg | Ben Marbury | Boston Red Sox | LF | RK | 1999-1999 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1071 | June-Reg | Allen Buckley | New York Yankees | P | AA | 2002-2006 | C | East Central Community College | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 35 | 1072 | June-Reg | Removed Player | San Diego Padres | RK | 1998-1999 | C | Stanford University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1073 | June-Reg | Justin Toone | Houston Astros | P | - | H | Kingwood (Kingwood,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 35 | 1074 | June-Reg | Jeremy Barker | Atlanta Braves | P | - | H | Willows (Willows,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |