| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1999 | 2 | 52 | June-Reg | Carl Crawford | Tampa Bay Rays | OF | MLB | 1999-2013 | H | Davis (Houston,TX) | SF | TX | 5615 | 254 | 114 | 118 | 667 | 432 | .292 | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 53 | June-Reg | Terry Byron | Florida Marlins | P | A+ | 1999-2003 | C | Indian River State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 54 | June-Reg | Brian Sanches | Kansas City Royals | P | MLB | 1997-2013 | C | Lamar University | SF | TX | 11 | 0 | 0 | 0 | 1 | 0 | .091 | 13 | 7 | 3.75 | 0 | 235 | 204 | 2 |
| 1999 | 2 | 55 | June-Reg | James Perez | Houston Astros | C | RK | 1999-2001 | H | Seymour (Seymour,CT) | SF | CT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 56 | June-Reg | Rob Bowen | Minnesota Twins | C | MLB | 1999-2008 | H | Homestead (Fort Wayne,IN) | SF | IN | 378 | 20 | 1 | 9 | 43 | 1 | .209 | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 57 | June-Reg | Brandon Phillips | Montreal Expos | SS | MLB | 1999-2013 | H | Redan (Stone Mountain,GA) | SF | GA | 4577 | 232 | 29 | 148 | 601 | 154 | .273 | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 58 | June-Reg | Wes Obermueller | Kansas City Royals | P | MLB | 1998-2007 | C | University of Iowa | SF | IA | 93 | 5 | 1 | 0 | 6 | 0 | .237 | 11 | 22 | 5.82 | 0 | 315 | 166 | 48 |
| 1999 | 2 | 59 | June-Reg | Ryan Doumit | Pittsburgh Pirates | C | MLB | 1999-2013 | H | Moses Lake (Moses Lake,WA) | SF | WA | 2451 | 159 | 6 | 85 | 341 | 10 | .272 | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 60 | June-Reg | Ryan Ludwick | Oakland Athletics | OF | MLB | 1997-2013 | C | UNLV | SF | NV | 3063 | 176 | 8 | 143 | 530 | 17 | .263 | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 61 | June-Reg | Kade Johnson | Milwaukee Brewers | P | AA | 2000-2012 | C | Seminole State College | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 62 | June-Reg | John Thomas | San Francisco Giants | P | AAA | 2001-2006 | H | Righetti (Santa Maria,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 63 | June-Reg | Jason Cooper ** | Philadelphia Phillies | H | AAA | 2000-2011 | H | Moses Lake (Moses Lake,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 64 | June-Reg | Jonathan Wright | Chicago White Sox | P | Ind | 2001-2005 | C | University of Arkansas | SF | AR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 65 | June-Reg | Ben Broussard | Cincinnati Reds | OF | MLB | 1999-2009 | C | McNeese State University | SF | LA | 2136 | 114 | 13 | 87 | 314 | 15 | .263 | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 66 | June-Reg | Bobby Hill ** | Chicago White Sox | 2B | MLB | 1997-2011 | C | University of Miami | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 67 | June-Reg | Ryan Kibler | Colorado Rockies | P | AA | 1999-2002 | H | King (Tampa,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 68 | June-Reg | John Lackey | Anaheim Angels | P | MLB | 1999-2013 | C | Grayson County College | SF | TX | 38 | 2 | 0 | 0 | 2 | 0 | .105 | 128 | 94 | 4.10 | 0 | 1876 | 1465 | 294 |
| 1999 | 2 | 69 | June-Reg | Brennan King | Los Angeles Dodgers | IF | AAA | 1999-2008 | H | Oakland (Mufreesboro,TN) | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 70 | June-Reg | Mike Snyder | Toronto Blue Jays | 3B | AA | 1999-2005 | H | Ayala (Chino Hills,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 71 | June-Reg | Jeremy Ward | Arizona Diamondbacks | P | AAA | 1999-2006 | C | Long Beach State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 72 | June-Reg | Nick Regilio | Texas Rangers | P | MLB | 1999-2009 | C | Jacksonville University | SF | FL | -- | -- | -- | -- | -- | -- | -- | 1 | 6 | 5.35 | 0 | 37 | 26 | 4 |
| 1999 | 2 | 73 | June-Reg | Neal Musser | New York Mets | P | MLB | 1999-2010 | H | Benton Central (Oxford,IN) | SF | IN | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 0 | 1 | 4.21 | 0 | 26 | 19 | 0 |
| 1999 | 2 | 74 | June-Reg | Will Hartley | Cleveland Indians | C | RK | 1999-2000 | H | Bradford (Starke,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 75 | June-Reg | Jack Taschner | San Francisco Giants | P | MLB | 1999-2010 | C | University of Wisconsin | SF | WI | 2 | 0 | 0 | 0 | 0 | 0 | .000 | 10 | 5 | 5.14 | 0 | 189 | 160 | 0 |
| 1999 | 2 | 76 | June-Reg | Matt Thompson | Boston Red Sox | P | A+ | 1999-2004 | H | Timberline (Boise,ID) | SF | ID | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 77 | June-Reg | Mike Mallory | Chicago Cubs | OF | AA | 1999-2006 | H | Dinwiddie County (Dinwiddie,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 78 | June-Reg | Tommy Winrow | New York Yankees | OF | AA | 1999-2004 | H | Bishop Verot (Fort Myers,FL) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 2 | 79 | June-Reg | Alberto Concepcion ** | San Diego Padres | C-3B | AAA | 2000-2008 | H | El Segundo (El Segundo,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 80 | June-Reg | Travis Anderson | Houston Astros | P | AA | 1999-2004 | C | University of Washington | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 81 | June-Reg | Matt Butler | Atlanta Braves | P | A+ | 1999-2003 | H | Hattiesburg (Hattiesburg,MS) | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 82 | June-Reg | Josh Pearce | St. Louis Cardinals | P | MLB | 1999-2005 | C | University of Arizona | SF | AZ | 4 | 0 | 0 | 0 | 1 | 0 | .250 | 0 | 0 | 5.55 | 0 | 24 | 5 | 3 |
| 1999 | 2 | 83 | June-Reg | Drew Meyer ** | Los Angeles Dodgers | SS | MLB | 2002-2010 | H | Bishop England (Charleston,SC) | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 2 | 84 | June-Reg | Jake Joseph | New York Mets | P | AAA | 1999-2005 | C | Cosumnes River College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |