| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1999 | 16 | 475 | June-Reg | Danny Lopaze ** | Tampa Bay Rays | 1B | A | 2000-2003 | H | Potomac (Dumfries,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 476 | June-Reg | Jared Wykoff | Florida Marlins | P | RK | 1999-2003 | H | Kinder (Kinder,LA) | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 477 | June-Reg | Steve Bess | Detroit Tigers | IF | AA | 1998-2004 | C | Rice University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 478 | June-Reg | Greg Perkin | Arizona Diamondbacks | P | A | 1999-2002 | H | Kingwood (Kingwood,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 479 | June-Reg | Kevin West | Minnesota Twins | OF | AAA | 1999-2010 | C | Mendocino College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 480 | June-Reg | Matt Watson | Montreal Expos | OF | MLB | 1998-2011 | C | Xavier University | SF | OH | 101 | 7 | 0 | 1 | 11 | 0 | .188 | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 481 | June-Reg | Sam Smith ** | Kansas City Royals | P | AA | 1997-2006 | C | Trinidad State Junior College | SF | CO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 482 | June-Reg | Justin Martin | Pittsburgh Pirates | 2B | AA | 1999-2001 | C | University of Nevada | SF | NV | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 483 | June-Reg | Matt Allegra | Oakland Athletics | OF | AA | 2000-2007 | H | Lake Mary (Lake Mary,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 484 | June-Reg | Jason Tibesar | Milwaukee Brewers | RF | - | C | South Mountain Community College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 16 | 485 | June-Reg | Sean Parnell | Seattle Mariners | OF | A | 1999-2001 | C | University of Wisconsin | SF | WI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 486 | June-Reg | Chris Keelin | Philadelphia Phillies | P | AA | 1999-2004 | C | Montclair State University | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 487 | June-Reg | Shaun Babula | Baltimore Orioles | P | AAA | 1999-2009 | C | Philadelphia University | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 488 | June-Reg | Francisco Escamilla | Cincinnati Reds | P | A | 1999-2000 | H | Lubbock Christian (Lubbock,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 489 | June-Reg | Ben Birk ** | Chicago White Sox | P | RK | 1998-2002 | C | University of Minnesota | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 490 | June-Reg | Cam Esslinger | Colorado Rockies | P | AAA | 1999-2005 | C | Seton Hall University | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 491 | June-Reg | Brandon Jackson | Anaheim Angels | IF | AA | 1997-2003 | C | Savannah State University | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 492 | June-Reg | Cheyenne Janke | St. Louis Cardinals | P | AA | 1999-2003 | C | Nicholls State University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 493 | June-Reg | James Detwiler | Toronto Blue Jays | P | A- | 1999-2000 | C | Old Dominion University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 494 | June-Reg | Tymber Lee ** | Los Angeles Dodgers | P | A- | 2000-2002 | C | Wichita State University | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 495 | June-Reg | Joel Alvarado ** | Texas Rangers | C | AA | 2001-2004 | C | Garden City Community College | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 496 | June-Reg | Gene Desalme ** | New York Mets | P | RK | 2001-2004 | C | St. Louis Community College-Meramec | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 497 | June-Reg | Anthony Marini | Cleveland Indians | P | A+ | 1998-2001 | C | Kennesaw State University | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 498 | June-Reg | Micah Holst | San Francisco Giants | OF | AAA | 1996-2004 | C | Missouri State University | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 499 | June-Reg | Charlie Manning ** | Boston Red Sox | P | MLB | 2001-2012 | C | Polk State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 500 | June-Reg | Tony Gsell | Chicago Cubs | 2B | A | 1999-2006 | C | Old Dominion University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 501 | June-Reg | Bryan Grace | New York Yankees | P | AA | 1996-2003 | C | Louisiana State University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 502 | June-Reg | Gregory Ienni | San Diego Padres | CF | RK | 1999-1999 | C | Cal State Los Angeles | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 503 | June-Reg | Daniel Parker | Houston Astros | P | A- | 1999-2002 | C | Diablo Valley College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 16 | 504 | June-Reg | Kevin Green | Atlanta Braves | C | A | 1999-2001 | C | Georgia Perimeter College | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |