| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1998 | 3 | 74 | June-Reg | Jorge Padilla | Philadelphia Phillies | OF | MLB | 1998-2012 | H | Florida Air Academy (Melbourne,FL) | SF | FL | 25 | 0 | 0 | 0 | 0 | 0 | .120 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 75 | June-Reg | Kevin Miller | Oakland Athletics | 3B | A+ | 1998-1998 | C | University of Washington | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 76 | June-Reg | Robert Bass | Chicago Cubs | 3B | - | H | Fayette County (Fayette,AL) | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1998 | 3 | 77 | June-Reg | Ben Cordova | Kansas City Royals | OF | A | 1999-2003 | H | Marian Catholic (San Diego,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 78 | June-Reg | Gabe Johnson | St. Louis Cardinals | IF | AAA | 1998-2008 | H | Atlantic Community (Delray Beach,FL) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1998 | 3 | 79 | June-Reg | Brent Hoard | Minnesota Twins | P | AAA | 1996-2005 | C | Stanford University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 80 | June-Reg | Greg Porter ** | Cincinnati Reds | OF | AAA | 1999-2012 | H | Keller (Keller,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 81 | June-Reg | Clyde Williams | Montreal Expos | IF | AAA | 1998-2010 | H | Seminole (Sanford,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 82 | June-Reg | Beau Craig ** | San Diego Padres | C | AAA | 1999-2004 | H | Grossmont (El Cajon,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 83 | June-Reg | Barry Zito ** | Texas Rangers | P | MLB | 1997-2013 | C | UCLA | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 84 | June-Reg | Kevin Kelly ** | Montreal Expos | SS | A | 2000-2003 | H | Gloucester Catholic (Gloucester,NJ) | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 85 | June-Reg | Mike Maroth | Boston Red Sox | P | MLB | 1998-2010 | C | University of Central Florida | SF | FL | 30 | 1 | 0 | 0 | 3 | 1 | .233 | 50 | 67 | 5.05 | 0 | 918 | 443 | 150 |
| 1998 | 3 | 86 | June-Reg | Derry Hammond | Milwaukee Brewers | OF | A+ | 1998-2005 | H | West Point (West Point,MS) | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 87 | June-Reg | Tommy Marx | Detroit Tigers | P | A+ | 1998-2003 | H | Brother Rice (Bloomfield Hills,MI) | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 88 | June-Reg | Jeremy Harts | Pittsburgh Pirates | OF | AA | 1998-2005 | H | Columbia (Decatur,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 89 | June-Reg | Josh Fogg | Chicago White Sox | P | MLB | 1996-2010 | C | University of Florida | SF | FL | 335 | 4 | 0 | 0 | 11 | 1 | .119 | 62 | 69 | 5.03 | 0 | 1159 | 627 | 194 |
| 1998 | 3 | 90 | June-Reg | Kevin Gordon | Colorado Rockies | P | A | 1999-1999 | C | University of Central Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 91 | June-Reg | Paul French | Anaheim Angels | NCAA | 2002-2003 | H | Northgate (Walnut Creek,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1998 | 3 | 92 | June-Reg | Brad Busbin ** | Houston Astros | P | A- | 2001-2002 | H | Dr. Phillips (Orlando,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 93 | June-Reg | Scott Pratt | Cleveland Indians | OF | AAA | 1998-2005 | C | Auburn University | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 94 | June-Reg | Jason Saenz | New York Mets | P | AAA | 1996-2005 | C | USC | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 95 | June-Reg | Andy Van Hekken | Seattle Mariners | P | MLB | 1998-2011 | H | Holland (Holland,MI) | SF | MI | -- | -- | -- | -- | -- | -- | -- | 1 | 3 | 3.00 | 0 | 30 | 5 | 5 |
| 1998 | 3 | 96 | June-Reg | Alex Santos ** | Los Angeles Dodgers | P | AAA | 1997-2006 | C | University of Miami | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 97 | June-Reg | Drew Henson | New York Yankees | 3B | MLB | 1998-2003 | H | Brighton (Brighton,MI) | SF | 9 | 0 | 0 | 0 | 0 | 0 | .111 | -- | -- | -- | -- | -- | -- | -- | |
| 1998 | 3 | 98 | June-Reg | Mike Dean | San Francisco Giants | C | A+ | 1998-2000 | C | Oral Roberts University | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 99 | June-Reg | Steve Bechler | Baltimore Orioles | P | MLB | 1998-2002 | H | South Medford (Medford,OR) | SF | OR | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 13.50 | 0 | 5 | 3 | 0 |
| 1998 | 3 | 100 | June-Reg | Dave Callahan | Florida Marlins | H | MLB | 1910-1911 | H | Harvey (Harvey,IL) | SF | FL | 60 | 1 | 1 | 0 | 2 | 5 | .200 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 101 | June-Reg | Ryan Langerhans | Atlanta Braves | OF | MLB | 1998-2013 | H | Round Rock (Round Rock,TX) | SF | TX | 1239 | 58 | 12 | 33 | 125 | 10 | .226 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 102 | June-Reg | Dan Mozingo | Chicago White Sox | P | AA | 1999-2006 | H | Ashtabula (Ashtabula,OH) | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 3 | 103 | June-Reg | Darryl Conyer | Arizona Diamondbacks | OF | RK | 1998-2000 | H | Mission Bay (San Diego,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |