| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1998 | 2 | 44 | June-Reg | Brad Baisley | Philadelphia Phillies | P | AA | 1998-2004 | H | Land O'Lakes (Land O'Lakes,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 45 | June-Reg | Gerald Laird | Oakland Athletics | C | MLB | 1999-2013 | H | La Quinta (Westminster,CA) | SF | CA | 2177 | 121 | 9 | 37 | 215 | 20 | .244 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 46 | June-Reg | Dave Kelton | Chicago Cubs | 3B | MLB | 1998-2006 | H | Troup County (LaGrange,GA) | SF | GA | 22 | 2 | 0 | 0 | 1 | 0 | .136 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 47 | June-Reg | Robbie Morrison | Kansas City Royals | P | AA | 1996-2004 | C | University of Miami | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 48 | June-Reg | Chad Hutchinson | St. Louis Cardinals | P | MLB | 1996-2001 | C | Stanford University | SF | CA | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 0 | 0 | 24.75 | 0 | 4 | 2 | 0 |
| 1998 | 2 | 49 | June-Reg | Marcus Moseley | Minnesota Twins | P | A+ | 1998-2004 | H | Cookeville (Cookeville,TN) | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 50 | June-Reg | Adam Dunn | Cincinnati Reds | OF | MLB | 1998-2013 | H | New Caney (New Caney,TX) | SF | TX | 5929 | 301 | 10 | 406 | 1018 | 61 | .240 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 51 | June-Reg | Ben Knapp | Baltimore Orioles | P | A+ | 1999-2004 | H | Oviedo (Oviedo,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 52 | June-Reg | Matt Belisle | Atlanta Braves | P | MLB | 1999-2013 | H | McCallum (Austin,TX) | SF | TX | 83 | 3 | 0 | 0 | 3 | 1 | .084 | 39 | 40 | 4.38 | 5 | 617 | 470 | 43 |
| 1998 | 2 | 53 | June-Reg | Cody Nowlin | Texas Rangers | OF | A+ | 1998-2009 | H | Clovis (Clovis,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 54 | June-Reg | Eric Good | Montreal Expos | P | A+ | 1998-2001 | H | Mishawaka (Mishawaka,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 55 | June-Reg | Tim Lemon | St. Louis Cardinals | OF | A+ | 1985-2004 | H | La Mirada (La Mirada,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 56 | June-Reg | Nick Neugebauer | Milwaukee Brewers | P | MLB | 1999-2004 | H | Arlington (Riverside,CA) | SF | CA | 22 | 1 | 0 | 0 | 1 | 0 | .091 | 2 | 8 | 4.99 | 0 | 61 | 58 | 14 |
| 1998 | 2 | 57 | June-Reg | Brandon Inge | Detroit Tigers | C | MLB | 1998-2013 | C | Virginia Commonwealth University | SF | VA | 4909 | 225 | 38 | 151 | 641 | 45 | .234 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 58 | June-Reg | Jeremy Cotten | Pittsburgh Pirates | 3B | A+ | 1998-2002 | H | Fuquay Varina (Fuquay Varina,NC) | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 59 | June-Reg | Gary Majewski | Chicago White Sox | P | MLB | 1999-2012 | H | St. Pius X (Houston,TX) | SF | TX | 14 | 0 | 0 | 0 | 0 | 0 | .000 | 9 | 13 | 4.75 | 2 | 242 | 143 | 0 |
| 1998 | 2 | 60 | June-Reg | Jermaine Van Buren | Colorado Rockies | P | MLB | 1998-2010 | H | Hattiesburg (Hattiesburg,MS) | SF | MS | -- | -- | -- | -- | -- | -- | -- | 1 | 2 | 9.00 | 0 | 19 | 11 | 0 |
| 1998 | 2 | 61 | June-Reg | Brandon Emanuel | Anaheim Angels | P | AAA | 1998-2006 | C | Northwestern State University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 62 | June-Reg | Jeff Goldbach | Chicago Cubs | C | AA | 1998-2006 | H | Princeton (Princeton,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 63 | June-Reg | Zach Sorensen | Cleveland Indians | SS | MLB | 1996-2007 | C | Wichita State University | SF | KS | 49 | 2 | 0 | 1 | 2 | 0 | .143 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 64 | June-Reg | Pat Strange | New York Mets | P | MLB | 1998-2004 | H | Springfield Central (Springfield,MA) | SF | MA | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 0 | 0 | 6.35 | 0 | 17 | 9 | 0 |
| 1998 | 2 | 65 | June-Reg | Jeff Verplancke ** | Seattle Mariners | P | AAA | 2000-2002 | C | Cal State Los Angeles | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 66 | June-Reg | Mike Fischer | Los Angeles Dodgers | P-SS | AA | 1998-2002 | C | University of South Alabama | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 67 | June-Reg | Randy Keisler | New York Yankees | P | MLB | 1998-2012 | C | Louisiana State University | SF | LA | 25 | 2 | 0 | 1 | 2 | 0 | .200 | 4 | 4 | 6.63 | 0 | 151 | 100 | 20 |
| 1998 | 2 | 68 | June-Reg | Sammy Serrano | San Francisco Giants | C | A+ | 1998-2001 | C | Stetson University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 69 | June-Reg | Alex Hart ** | Baltimore Orioles | P | A+ | 2000-2004 | H | Chambersburg Area (Chambersburg,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 70 | June-Reg | Derek Wathan | Florida Marlins | SS | AAA | 1996-2008 | C | University of Oklahoma | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 71 | June-Reg | Jody Gerut | Colorado Rockies | OF | MLB | 1996-2010 | C | Stanford University | SF | CA | 1804 | 107 | 13 | 59 | 226 | 30 | .262 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 72 | June-Reg | Chris Magruder | San Francisco Giants | OF | MLB | 1996-2005 | C | University of Washington | SF | WA | 540 | 32 | 3 | 11 | 56 | 5 | .220 | -- | -- | -- | -- | -- | -- | -- |
| 1998 | 2 | 73 | June-Reg | Adam Pettyjohn | Detroit Tigers | P | MLB | 1998-2010 | C | Fresno State University | SF | CA | 3 | 0 | 0 | 0 | 0 | 0 | .000 | 1 | 7 | 6.65 | 0 | 69 | 41 | 10 |