| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1996 | 1 | 1 | June-Reg | Kris Benson | Pittsburgh Pirates | P | MLB | 1994-2010 | C | Clemson University | SF | SC | 321 | 7 | 0 | 1 | 22 | 0 | .131 | 70 | 75 | 4.42 | 0 | 1244 | 806 | 200 |
| 1996 | 1 | 2 | June-Reg | Travis Lee | Minnesota Twins | 1B | MLB | 1994-2006 | C | San Diego State University | SF | CA | 3740 | 191 | 16 | 115 | 488 | 59 | .256 | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 3 | June-Reg | Braden Looper | St. Louis Cardinals | P | MLB | 1997-2009 | C | Wichita State University | SF | KS | 186 | 6 | 1 | 0 | 18 | 0 | .215 | 72 | 65 | 4.15 | 103 | 1176 | 669 | 97 |
| 1996 | 1 | 4 | June-Reg | Billy Koch | Toronto Blue Jays | P | MLB | 1994-2004 | C | Clemson University | SF | SC | 2 | 0 | 0 | 0 | 0 | 0 | .000 | 29 | 25 | 3.89 | 163 | 407 | 357 | 0 |
| 1996 | 1 | 5 | June-Reg | John Patterson | Montreal Expos | P | MLB | 1997-2007 | H | West Orange-Stark (Orange,TX) | SF | TX | 133 | 3 | 0 | 0 | 2 | 0 | .105 | 18 | 25 | 4.32 | 1 | 454 | 415 | 78 |
| 1996 | 1 | 6 | June-Reg | Seth Greisinger | Detroit Tigers | P | MLB | 1995-2012 | C | University of Virginia | SF | VA | 6 | 0 | 0 | 0 | 1 | 0 | .167 | 10 | 16 | 5.51 | 0 | 224 | 118 | 39 |
| 1996 | 1 | 7 | June-Reg | Matt White | San Francisco Giants | P | AAA | 1997-2003 | H | Waynesboro Area (Waynesboro,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 8 | June-Reg | Chad Green | Milwaukee Brewers | OF | AAA | 1996-2003 | C | University of Kentucky | SF | KY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 9 | June-Reg | Mark Kotsay | Florida Marlins | OF | MLB | 1994-2013 | C | Cal State Fullerton | SF | CA | 6309 | 351 | 48 | 126 | 708 | 98 | .278 | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 10 | June-Reg | Eric Chavez | Oakland Athletics | 3B | MLB | 1997-2013 | H | Mount Carmel (San Diego,CA) | SF | CA | 5221 | 301 | 21 | 248 | 850 | 47 | .267 | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 11 | June-Reg | Adam Eaton | Philadelphia Phillies | P | MLB | 1997-2009 | H | Snohomish (Snohomish,WA) | SF | WA | 341 | 16 | 1 | 3 | 26 | 5 | .194 | 71 | 68 | 4.94 | 0 | 1179 | 855 | 201 |
| 1996 | 1 | 12 | June-Reg | Bobby Seay | Chicago White Sox | P | MLB | 1997-2009 | H | Sarasota (Sarasota,FL) | SF | FL | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 11 | 6 | 4.16 | 1 | 223 | 190 | 0 |
| 1996 | 1 | 13 | June-Reg | Rob Stratton | New York Mets | OF | AAA | 1996-2006 | H | San Marcos (San Marcos,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 14 | June-Reg | Dee Brown | Kansas City Royals | OF | MLB | 1996-2011 | H | Marlboro Central (Marlboro,NY) | SF | NY | 814 | 37 | 1 | 14 | 89 | 8 | .233 | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 15 | June-Reg | Matt Halloran | San Diego Padres | SS | AA | 1996-2001 | H | Chancellor (Fredericksburg,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 16 | June-Reg | Joe Lawrence | Toronto Blue Jays | SS | MLB | 1996-2003 | H | Barbe (Lake Charles,LA) | SF | LA | 150 | 4 | 0 | 2 | 15 | 2 | .180 | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 17 | June-Reg | Todd Noel | Chicago Cubs | P | A+ | 1996-2000 | H | North Vermillion (Maurice,LA) | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 18 | June-Reg | R.A. Dickey | Texas Rangers | P | MLB | 1994-2013 | C | University of Tennessee | SF | TN | 187 | 2 | 0 | 0 | 10 | 0 | .182 | 61 | 56 | 3.98 | 2 | 1059 | 739 | 139 |
| 1996 | 1 | 19 | June-Reg | Mark Johnson | Houston Astros | P | MLB | 1997-2005 | C | University of Hawaii | SF | HI | -- | -- | -- | -- | -- | -- | -- | 0 | 1 | 7.50 | 0 | 24 | 11 | 3 |
| 1996 | 1 | 20 | June-Reg | Eric Milton | New York Yankees | P | MLB | 1994-2009 | C | University of Maryland | SF | MD | 205 | 5 | 1 | 2 | 16 | 0 | .176 | 89 | 85 | 4.99 | 0 | 1582 | 1127 | 270 |
| 1996 | 1 | 21 | June-Reg | Jake Westbrook | Colorado Rockies | P | MLB | 1996-2013 | H | Madison County (Danielsville,GA) | SF | GA | 135 | 5 | 0 | 1 | 10 | 1 | .119 | 98 | 95 | 4.30 | 0 | 1631 | 921 | 254 |
| 1996 | 1 | 22 | June-Reg | Gil Meche | Seattle Mariners | P | MLB | 1996-2010 | H | Acadiana (Lafayette,LA) | SF | LA | 23 | 0 | 0 | 0 | 2 | 0 | .130 | 84 | 83 | 4.49 | 0 | 1432 | 1050 | 243 |
| 1996 | 1 | 23 | June-Reg | Damian Rolls | Los Angeles Dodgers | 3B | MLB | 1996-2009 | H | F.L. Schlagle (Kansas City,KS) | SF | KS | 819 | 42 | 2 | 9 | 73 | 27 | .248 | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 24 | June-Reg | Sam Marsonek | Texas Rangers | P | MLB | 1997-2007 | H | Jesuit (Tampa,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 0.00 | 0 | 1 | 0 | 0 |
| 1996 | 1 | 25 | June-Reg | John Oliver | Cincinnati Reds | OF | A | 1996-1999 | H | Lake-Lehman (Lehman,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 26 | June-Reg | Josh Garrett | Boston Red Sox | P | AA | 1996-2001 | H | South Spencer (Rockport,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 27 | June-Reg | A.J. Zapp | Atlanta Braves | 1B | AAA | 1996-2006 | H | Center Grove (Greenwood,IN) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1996 | 1 | 28 | June-Reg | Danny Peoples | Cleveland Indians | 1B | AAA | 1994-2001 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 29 | June-Reg | Paul Wilder | Tampa Bay Rays | OF | A+ | 1996-2002 | H | Cary (Cary,NC) | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 30 | June-Reg | Nick Bierbrodt | Arizona Diamondbacks | P | MLB | 1996-2011 | H | Millikan (Long Beach,CA) | SF | CA | 8 | 1 | 0 | 0 | 0 | 0 | .500 | 6 | 9 | 6.66 | 0 | 145 | 112 | 25 |
| 1996 | 1 | 31 | June-Reg | Peter Tucci | Toronto Blue Jays | 1B-OF | AA | 1994-2001 | C | Providence College | SF | RI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 32 | June-Reg | Corey Lee | Texas Rangers | P | MLB | 1994-2009 | C | North Carolina State University | SF | NC | -- | -- | -- | -- | -- | -- | -- | 0 | 1 | 27.00 | 0 | 1 | 0 | 0 |
| 1996 | 1 | 33 | June-Reg | Matt McClendon ** | Cincinnati Reds | P | AAA | 1997-2004 | H | Dr. Phillips (Orlando,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1996 | 1 | 34 | June-Reg | Chris Reitsma | Boston Red Sox | P | MLB | 1996-2007 | H | Calgary Christian (Calgary,AB) | SF | AB | 87 | 1 | 0 | 0 | 5 | 0 | .103 | 32 | 46 | 4.70 | 37 | 609 | 359 | 53 |
| 1996 | 1 | 35 | June-Reg | Jason Marquis | Atlanta Braves | P | MLB | 1996-2013 | H | Tottenville (Staten Island,NY) | SF | NY | 605 | 33 | 2 | 5 | 54 | 1 | .202 | 112 | 109 | 4.60 | 1 | 1803 | 1065 | 289 |