| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1990 | 2 | 41 | June-Reg | Frankie Rodriguez | Boston Red Sox | P-SS | MLB | 1991-2008 | H | Eastern District (Brooklyn,NY) | SF | NY | 6 | 0 | 0 | 0 | 1 | 0 | .167 | 29 | 39 | 5.53 | 5 | 654 | 371 | 82 |
| 1990 | 2 | 42 | June-Reg | Curtis Shaw | Oakland Athletics | P | AAA | 1990-1998 | C | University of Kansas | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 43 | June-Reg | LaRue Baber | Milwaukee Brewers | OF | A+ | 1990-1994 | H | Grant (Sacramento,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 44 | June-Reg | Gary Mota | Houston Astros | OF | AA | 1992-1997 | C | Fullerton College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 45 | June-Reg | Robert Eenhoorn | New York Yankees | SS | MLB | 1990-1998 | C | Davidson College | SF | NC | 67 | 3 | 0 | 1 | 10 | 0 | .239 | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 46 | June-Reg | Darrell Whitmore | Cleveland Indians | OF | MLB | 1990-2002 | C | West Virginia University | SF | WV | 330 | 11 | 2 | 5 | 21 | 4 | .203 | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 47 | June-Reg | Mike Schiefelbein ** | Texas Rangers | P | A | 1992-1995 | H | Chatfield (Littleton,CO) | SF | CO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 48 | June-Reg | Aaron Ledesma | New York Mets | SS | MLB | 1990-2002 | C | Chabot College | SF | CA | 754 | 38 | 4 | 2 | 76 | 11 | .296 | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 49 | June-Reg | Michael Hardge | Montreal Expos | SS | AAA | 1990-2002 | H | Ellison (Killeen,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 50 | June-Reg | Tavo Alvarez | Montreal Expos | P | MLB | 1990-2001 | H | Tucson (Tucson,AZ) | SF | AZ | 16 | 0 | 0 | 0 | 0 | 0 | .125 | 3 | 6 | 5.40 | 0 | 58 | 26 | 13 |
| 1990 | 2 | 51 | June-Reg | Erik Schullstrom | Baltimore Orioles | P | MLB | 1990-2002 | C | Fresno State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 6.00 | 1 | 60 | 34 | 0 |
| 1990 | 2 | 52 | June-Reg | Jose Prado ** | San Francisco Giants | P | AA | 1993-1998 | H | Coral Gables (Coral Gables,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 53 | June-Reg | Chris Martin | Montreal Expos | SS | AAA | 1991-1999 | C | Pepperdine University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 54 | June-Reg | Chris Weinke | Toronto Blue Jays | 3B | AAA | 1991-1996 | H | Cretin-Derham Hall (St. Paul,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 55 | June-Reg | Ryan Hawblitzel | Chicago Cubs | P | MLB | 1990-1999 | H | Leonard (Lake Worth,FL) | SF | FL | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 0 | 1 | 6.00 | 0 | 15 | 7 | 0 |
| 1990 | 2 | 56 | June-Reg | Gary Hust | Oakland Athletics | OF | AA | 1990-1996 | H | Petal (Petal,MS) | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 57 | June-Reg | Phil Leftwich | California Angels | P | MLB | 1990-1996 | C | Radford University | SF | VA | -- | -- | -- | -- | -- | -- | -- | 9 | 17 | 4.99 | 0 | 202 | 102 | 34 |
| 1990 | 2 | 58 | June-Reg | Ron Caridad | Minnesota Twins | P | AA | 1990-1998 | H | Westminster Christian (Miami,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 59 | June-Reg | Keith Grunewald ** | Detroit Tigers | SS | AA | 1991-1997 | H | Walton (Marietta,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 60 | June-Reg | Tim Schweitzer ** | Philadelphia Phillies | P | NCAA | 1991-1992 | H | Reedsport (Reedsport,OR) | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 61 | June-Reg | Bob Wickman | Chicago White Sox | P | MLB | 1990-2007 | C | University of Wisconsin-Whitewater | SF | WI | 2 | 0 | 0 | 0 | 0 | 0 | .000 | 63 | 61 | 3.57 | 267 | 1059 | 785 | 28 |
| 1990 | 2 | 62 | June-Reg | Keith Gordon | Cincinnati Reds | SS | MLB | 1990-2002 | C | Wright State University | SF | OH | 6 | 0 | 0 | 0 | 0 | 0 | .167 | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 63 | June-Reg | Pat Bryant | Cleveland Indians | OF | AAA | 1990-1999 | H | Cleveland (Reseda,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 64 | June-Reg | Chris Haney | Montreal Expos | P | MLB | 1990-2002 | C | University of North Carolina-Charlotte | SF | NC | 36 | 0 | 0 | 0 | 4 | 0 | .111 | 38 | 52 | 5.07 | 1 | 825 | 442 | 125 |
| 1990 | 2 | 65 | June-Reg | Eric Helfand | Oakland Athletics | C | MLB | 1990-1998 | C | Arizona State University | SF | AZ | 105 | 2 | 1 | 0 | 9 | 0 | .171 | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 66 | June-Reg | Jayhawk Owens | Minnesota Twins | C | MLB | 1990-1999 | C | Middle Tennessee State University | SF | TN | 323 | 16 | 2 | 11 | 36 | 5 | .232 | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 67 | June-Reg | Eric Maloney ** | Chicago White Sox | P | - | H | Carmel (Carmel,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1990 | 2 | 68 | June-Reg | Leroy Williams | Los Angeles Dodgers | SS | A+ | 1990-1993 | H | East St. John (Reserve,LA) | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 69 | June-Reg | Jeff Williams | Baltimore Orioles | P | AAA | 1990-1997 | C | Wichita State University | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 70 | June-Reg | Joe Rosselli | San Francisco Giants | P | MLB | 1990-1996 | H | Bishop Alemany (Mission Hills,CA) | SF | CA | 10 | 0 | 0 | 0 | 1 | 0 | .200 | 2 | 1 | 8.70 | 0 | 30 | 7 | 5 |
| 1990 | 2 | 71 | June-Reg | Tim Hyers | Toronto Blue Jays | 1B-OF | MLB | 1990-1999 | H | Newton (Covington,GA) | SF | GA | 230 | 8 | 1 | 2 | 19 | 3 | .217 | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 72 | June-Reg | Troy Bradford | Chicago Cubs | P | AA | 1988-1995 | C | University of Arizona | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1990 | 2 | 73 | June-Reg | Scott Freeman | Los Angeles Dodgers | P | A+ | 1990-1994 | C | University of Wyoming | SF | WY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |