| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1989 | 1 | 1 | June-Reg | Ben McDonald | Baltimore Orioles | P | MLB | 1989-1997 | C | Louisiana State University | SF | LA | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 78 | 70 | 3.91 | 0 | 1291 | 894 | 198 |
| 1989 | 1 | 2 | June-Reg | Tyler Houston | Atlanta Braves | C | MLB | 1989-2003 | H | Valley (Las Vegas,NV) | SF | NV | 1805 | 84 | 6 | 63 | 253 | 10 | .265 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 3 | June-Reg | Roger Salkeld | Seattle Mariners | P | MLB | 1989-2000 | H | Saugus (Saugus,CA) | SF | CA | 32 | 0 | 0 | 0 | 0 | 0 | .031 | 10 | 10 | 5.61 | 0 | 189 | 141 | 34 |
| 1989 | 1 | 4 | June-Reg | Jeff Jackson | Philadelphia Phillies | OF | AA | 1989-1998 | H | Simeon Academy (Chicago,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 5 | June-Reg | Donald Harris | Texas Rangers | OF | MLB | 1989-2000 | C | Texas Tech University | SF | TX | 117 | 3 | 0 | 2 | 11 | 2 | .205 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 6 | June-Reg | Paul Coleman | St. Louis Cardinals | OF | AA | 1989-1996 | H | Frankston (Frankston,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 7 | June-Reg | Frank Thomas | Chicago White Sox | 1B | MLB | 1987-2008 | C | Auburn University | SF | AL | 8199 | 495 | 12 | 521 | 1704 | 32 | .301 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 8 | June-Reg | Earl Cunningham | Chicago Cubs | OF | A+ | 1989-1998 | H | Lancaster (Lancaster,SC) | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 9 | June-Reg | Kyle Abbott | California Angels | P | MLB | 1989-1996 | C | Long Beach State University | SF | CA | 31 | 1 | 0 | 0 | 2 | 0 | .097 | 4 | 17 | 5.20 | 0 | 185 | 124 | 22 |
| 1989 | 1 | 10 | June-Reg | Charles Johnson ** | Montreal Expos | C | MLB | 1990-2005 | H | Westwood (Fort Pierce,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 11 | June-Reg | Calvin Murray ** | Cleveland Indians | 3B-OF | MLB | 1993-2005 | H | W.T. White (Dallas,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 12 | June-Reg | Jeff Juden | Houston Astros | P | MLB | 1989-2004 | H | Salem (Salem,MA) | SF | MA | 119 | 3 | 0 | 1 | 13 | 0 | .109 | 27 | 32 | 4.81 | 0 | 533 | 441 | 76 |
| 1989 | 1 | 13 | June-Reg | Brent Mayne | Kansas City Royals | OF | MLB | 1988-2004 | C | Cal State Fullerton | SF | CA | 3614 | 178 | 8 | 38 | 403 | 18 | .263 | 1 | 0 | 0.00 | 0 | 1 | 0 | 0 |
| 1989 | 1 | 14 | June-Reg | Steve Hosey | San Francisco Giants | OF | MLB | 1989-1998 | C | Fresno State University | SF | CA | 58 | 2 | 0 | 1 | 7 | 1 | .259 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 15 | June-Reg | Kiki Jones | Los Angeles Dodgers | P | AA | 1989-2001 | H | Hillsborough (Tampa,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 16 | June-Reg | Greg Blosser | Boston Red Sox | OF | MLB | 1989-2008 | H | Sarasota (Sarasota,FL) | SF | FL | 39 | 1 | 0 | 0 | 2 | 1 | .077 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 17 | June-Reg | Cal Eldred | Milwaukee Brewers | P | MLB | 1989-2005 | C | University of Iowa | SF | IA | 72 | 2 | 0 | 0 | 4 | 0 | .111 | 86 | 74 | 4.42 | 9 | 1368 | 939 | 192 |
| 1989 | 1 | 18 | June-Reg | Willie Greene | Pittsburgh Pirates | SS | MLB | 1989-2000 | H | Jones County (Gray,GA) | SF | GA | 1902 | 76 | 12 | 86 | 307 | 17 | .234 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 19 | June-Reg | Eddie Zosky | Toronto Blue Jays | SS | MLB | 1989-2000 | C | Fresno State University | SF | CA | 50 | 1 | 2 | 0 | 3 | 0 | .160 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 20 | June-Reg | Scott Bryant | Cincinnati Reds | OF-P | AAA | 1988-1997 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 21 | June-Reg | Greg Gohr | Detroit Tigers | P | MLB | 1989-1997 | C | Santa Clara University | SF | CA | -- | -- | -- | -- | -- | -- | -- | 8 | 11 | 6.21 | 1 | 183 | 131 | 22 |
| 1989 | 1 | 22 | June-Reg | Tom Goodwin | Los Angeles Dodgers | OF | MLB | 1989-2005 | C | Fresno State University | SF | CA | 3846 | 125 | 39 | 24 | 284 | 369 | .268 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 23 | June-Reg | Mo Vaughn | Boston Red Sox | 1B | MLB | 1987-2003 | C | Seton Hall University | SF | NJ | 5532 | 270 | 10 | 328 | 1064 | 30 | .293 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 24 | June-Reg | Alan Zinter | New York Mets | C | MLB | 1988-2007 | C | University of Arizona | SF | AZ | 78 | 4 | 0 | 3 | 9 | 0 | .167 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 25 | June-Reg | Chuck Knoblauch | Minnesota Twins | SS | MLB | 1987-2002 | C | Texas A&M University | SF | TX | 6366 | 322 | 64 | 98 | 615 | 407 | .289 | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 26 | June-Reg | Scott Burrell ** | Seattle Mariners | P | A+ | 1977-1991 | H | Hamden (Hamden,CT) | SF | CT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 27 | June-Reg | Todd Jones | Houston Astros | P | MLB | 1987-2008 | C | Jacksonville State University | SF | AL | 19 | 1 | 0 | 0 | 0 | 0 | .211 | 58 | 63 | 3.97 | 319 | 1072 | 868 | 1 |
| 1989 | 1 | 28 | June-Reg | Gordon Powell | Milwaukee Brewers | 3B | A+ | 1989-1998 | H | Hughes Center (Cincinnati,OH) | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1989 | 1 | 29 | June-Reg | Jamie McAndrew | Los Angeles Dodgers | P | MLB | 1987-1997 | C | University of Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | 3 | 4 | 5.98 | 0 | 56 | 27 | 8 |
| 1989 | 1 | 30 | June-Reg | Kevin Morton | Boston Red Sox | P | MLB | 1989-1995 | C | Seton Hall University | SF | NJ | -- | -- | -- | -- | -- | -- | -- | 6 | 5 | 4.59 | 0 | 86 | 45 | 15 |