| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1988 | 39 | 994 | June-Reg | Walter Wilkerson | San Diego Padres | p | RK | 1988-1988 | H | Clermont (Clermont,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 995 | June-Reg | Marc Tepper | Cleveland Indians | 1B | A+ | 1988-1991 | C | Lubbock Christian University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 996 | June-Reg | Scott Ruffcorn ** | Atlanta Braves | p | MLB | 1991-1999 | H | Austin (Austin,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 997 | June-Reg | Bob Block | Baltimore Orioles | Of | A- | 1988-1988 | C | Southern Arkansas University | SF | AR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 998 | June-Reg | K.G. White | Los Angeles Dodgers | Of | - | C | Georgia Tech | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 39 | 999 | June-Reg | Brian Evans | Texas Rangers | p | A+ | 1988-1990 | C | Jacksonville University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1000 | June-Reg | Mark Hudgins | Houston Astros | SS | RK | 1988-1988 | H | Plantation (Plantation,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1001 | June-Reg | Rodney Eldridge | California Angels | 1B-Of | A+ | 1988-1992 | C | Scottsdale Community College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1002 | June-Reg | Tracy Smith | Chicago Cubs | p | A+ | 1988-1990 | C | Miami University | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1003 | June-Reg | Marvin Benard ** | Chicago White Sox | Of | MLB | 1992-2004 | H | Bell (Bell,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1004 | June-Reg | Tom Crowley | Philadelphia Phillies | 2B | Ind | 1994-1996 | H | Deptford Township (Deptford,NJ) | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1005 | June-Reg | Ken Buksa | Pittsburgh Pirates | C-Of | A- | 1988-1988 | C | Saint Xavier University | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1006 | June-Reg | Glen Raasch | Seattle Mariners | C | AA | 1989-1994 | C | Mount San Antonio College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1007 | June-Reg | Dan Cholowsky ** | Cincinnati Reds | SS | AAA | 1990-1998 | H | Bellarmine Prep (San Jose,CA) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 39 | 1008 | June-Reg | Tim Vannaman | Oakland Athletics | Of | A+ | 1988-1990 | C | Rice University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1009 | June-Reg | Lance Burnett | San Francisco Giants | Of | RK | 1988-1988 | H | Crowder (Crowder,OK) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1010 | June-Reg | Brad Hopper | Kansas City Royals | p | AA | 1988-1991 | C | Fullerton College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1011 | June-Reg | Ken Lake | Montreal Expos | Of | AA | 1988-1991 | C | University of Wyoming | SF | WY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1012 | June-Reg | Sheldon Forehand | Minnesota Twins | Of | - | H | American (Fremont,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 39 | 1013 | June-Reg | Bryan Rogers | New York Mets | p | AAA | 1988-1997 | C | Sonoma State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1014 | June-Reg | Thomas Quinn ** | New York Yankees | p | - | C | South Florida Community College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 39 | 1015 | June-Reg | Scott Buchheit ** | St. Louis Cardinals | p | A | 1991-1991 | H | St. Dominic (O'Fallon,MO) | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1016 | June-Reg | Chris Tacik | Milwaukee Brewers | p | - | H | Thomas Johnson (Frederick,MD) | SF | MD | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 39 | 1017 | June-Reg | Eric Reichenbach ** | Toronto Blue Jays | p | A+ | 1991-1994 | H | Sachem East (Farmingville,NY) | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 39 | 1018 | June-Reg | Todd Winston | Detroit Tigers | C | A+ | 1992-1994 | H | Marysville (Marysville,MI) | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |