| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1988 | 1 | 1 | June-Reg | Andy Benes | San Diego Padres | P | MLB | 1986-2002 | C | University of Evansville | SF | IL | 741 | 21 | 0 | 8 | 50 | 0 | .143 | 155 | 139 | 3.97 | 1 | 2505 | 2000 | 387 |
| 1988 | 1 | 2 | June-Reg | Mark Lewis | Cleveland Indians | SS | MLB | 1988-2007 | H | Hamilton (Hamilton,OH) | SF | OH | 2795 | 155 | 13 | 48 | 306 | 29 | .263 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 3 | June-Reg | Steve Avery | Atlanta Braves | P | MLB | 1988-2003 | H | John F. Kennedy (Taylor,MI) | SF | MI | 437 | 14 | 4 | 4 | 32 | 1 | .174 | 96 | 83 | 4.19 | 0 | 1555 | 980 | 261 |
| 1988 | 1 | 4 | June-Reg | Gregg Olson | Baltimore Orioles | P | MLB | 1988-2001 | C | Auburn University | SF | AL | 4 | 0 | 0 | 1 | 2 | 0 | .250 | 40 | 39 | 3.46 | 217 | 672 | 588 | 0 |
| 1988 | 1 | 5 | June-Reg | Bill Bene | Los Angeles Dodgers | P | AAA | 1988-1997 | C | Cal State Los Angeles | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 6 | June-Reg | Monty Fariss | Texas Rangers | SS | MLB | 1986-1995 | C | Oklahoma State University | SF | OK | 226 | 10 | 2 | 4 | 29 | 0 | .217 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 7 | June-Reg | Willie Ansley | Houston Astros | OF | AAA | 1989-1995 | H | Plainview (Plainview,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 8 | June-Reg | Jim Abbott | California Angels | P | MLB | 1986-1999 | C | University of Michigan | SF | MI | 21 | 0 | 0 | 0 | 3 | 0 | .095 | 87 | 108 | 4.25 | 0 | 1674 | 888 | 254 |
| 1988 | 1 | 9 | June-Reg | Ty Griffin | Chicago Cubs | 2B | AA | 1989-1997 | C | Georgia Tech | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 10 | June-Reg | Robin Ventura | Chicago White Sox | 3B | MLB | 1986-2004 | C | Oklahoma State University | SF | OK | 7064 | 338 | 14 | 294 | 1182 | 24 | .267 | 0 | 0 | 0.00 | 0 | 1 | 0 | 0 |
| 1988 | 1 | 11 | June-Reg | Pat Combs | Philadelphia Phillies | P | MLB | 1989-1995 | C | Baylor University | SF | TX | 95 | 4 | 0 | 0 | 4 | 1 | .147 | 17 | 17 | 4.22 | 0 | 305 | 190 | 54 |
| 1988 | 1 | 12 | June-Reg | Tom Fischer | Boston Red Sox | P | AAA | 1988-1996 | C | University of Wisconsin | SF | WI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 13 | June-Reg | Austin Manahan | Pittsburgh Pirates | SS | AA | 1988-1995 | H | Horizon (Scottsdale,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 14 | June-Reg | Tino Martinez | Seattle Mariners | 1B | MLB | 1986-2005 | C | University of Tampa | SF | FL | 7111 | 365 | 21 | 339 | 1271 | 27 | .271 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 15 | June-Reg | Royce Clayton | San Francisco Giants | SS | MLB | 1988-2007 | H | St. Bernard (Playa del Ray,CA) | SF | CA | 7379 | 363 | 55 | 110 | 723 | 231 | .258 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 16 | June-Reg | Stan Royer | Oakland Athletics | C-3B | MLB | 1988-1994 | C | Eastern Illinois University | SF | IL | 164 | 10 | 0 | 4 | 21 | 0 | .250 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 17 | June-Reg | Charles Nagy | Cleveland Indians | P | MLB | 1987-2003 | C | University of Connecticut | SF | CT | 19 | 0 | 0 | 0 | 0 | 0 | .105 | 129 | 105 | 4.51 | 0 | 1955 | 1242 | 297 |
| 1988 | 1 | 18 | June-Reg | Hugh Walker | Kansas City Royals | OF | AA | 1988-1997 | H | Jacksonville (Jacksonville,AR) | SF | AR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 19 | June-Reg | Dave Wainhouse | Montreal Expos | P | MLB | 1989-2001 | C | Washington State University | SF | WA | 5 | 0 | 0 | 0 | 0 | 0 | .000 | 2 | 3 | 7.37 | 0 | 105 | 66 | 0 |
| 1988 | 1 | 20 | June-Reg | Johnny Ard | Minnesota Twins | P | AAA | 1988-1996 | C | State College of Florida, Manatee-Sarasota | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 21 | June-Reg | Dave Proctor | New York Mets | P | AA | 1988-1992 | C | Allen County Community College | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 22 | June-Reg | John Ericks | St. Louis Cardinals | P | MLB | 1986-1997 | C | University of Illinois | SF | IL | 36 | 1 | 0 | 0 | 1 | 0 | .083 | 8 | 14 | 4.78 | 14 | 162 | 132 | 22 |
| 1988 | 1 | 23 | June-Reg | Brad DuVall | St. Louis Cardinals | P | A+ | 1988-1990 | C | Virginia Tech | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 24 | June-Reg | Alex Fernandez ** | Milwaukee Brewers | P | MLB | 1990-2000 | H | Monsignor Pace (Miami,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 25 | June-Reg | Ed Sprague | Toronto Blue Jays | 3B-C | MLB | 1989-2002 | C | Stanford University | SF | CA | 4095 | 225 | 12 | 152 | 558 | 6 | .247 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 26 | June-Reg | Rico Brogna | Detroit Tigers | 1B-P | MLB | 1988-2001 | H | Watertown (Watertown,CT) | SF | CT | 2958 | 176 | 13 | 106 | 458 | 32 | .269 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 27 | June-Reg | Jeff Mutis | Cleveland Indians | P | MLB | 1988-1997 | C | Lafayette College | SF | PA | 3 | 0 | 0 | 0 | 0 | 0 | .000 | 4 | 11 | 6.48 | 0 | 143 | 73 | 18 |
| 1988 | 1 | 28 | June-Reg | Ricky Gutierrez ** | Baltimore Orioles | SS | MLB | 1988-2006 | H | American (Hialeah,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 29 | June-Reg | Ted Wood | San Francisco Giants | OF | MLB | 1989-1995 | C | University of New Orleans | SF | LA | 109 | 3 | 0 | 1 | 7 | 0 | .183 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 1 | 30 | June-Reg | Brian Jordan | St. Louis Cardinals | OF | MLB | 1988-2006 | C | University of Richmond | SF | VA | 5160 | 267 | 37 | 184 | 821 | 119 | .282 | -- | -- | -- | -- | -- | -- | -- |