| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1988 | 3 | 58 | June-Reg | Ray Holbert | San Diego Padres | SS | MLB | 1988-2000 | H | David Starr Jordan (Long Beach,CA) | SF | CA | 202 | 5 | 1 | 2 | 11 | 11 | .223 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 59 | June-Reg | Pork Chop Pough | Cleveland Indians | P-SS | AAA | 1988-2003 | H | Avon Park (Avon Park,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 60 | June-Reg | Preston Watson | Atlanta Braves | P | AA | 1988-1992 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 61 | June-Reg | Stacy Jones | Baltimore Orioles | P | MLB | 1988-1997 | C | Auburn University | SF | AL | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 3.46 | 0 | 13 | 11 | 1 |
| 1988 | 3 | 62 | June-Reg | Billy Ashley | Los Angeles Dodgers | OF | MLB | 1988-2001 | H | Belleville (Belleville,MI) | SF | 618 | 23 | 1 | 28 | 84 | 0 | .233 | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 3 | 63 | June-Reg | Darren Oliver | Texas Rangers | P | MLB | 1988-2013 | H | Rio Linda (Rio Linda,CA) | SF | CA | 217 | 11 | 0 | 1 | 20 | 0 | .221 | 110 | 89 | 4.58 | 5 | 1818 | 1177 | 229 |
| 1988 | 3 | 64 | June-Reg | Scott Servais | Houston Astros | C | MLB | 1986-2002 | C | Creighton University | SF | NE | 2493 | 130 | 2 | 63 | 319 | 3 | .245 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 65 | June-Reg | Glenn Carter | California Angels | P | AAA | 1988-1995 | C | Triton College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 67 | June-Reg | Mike Mitchener | Chicago White Sox | P | A | 1988-1990 | C | Armstrong Atlantic State University | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 68 | June-Reg | Tim Mauser | Philadelphia Phillies | P | MLB | 1988-1996 | C | Texas Christian University | SF | TX | 14 | 0 | 0 | 0 | 0 | 0 | .071 | 2 | 6 | 4.37 | 2 | 119 | 93 | 0 |
| 1988 | 3 | 69 | June-Reg | Mickey Rivers | Boston Red Sox | OF | A+ | 1988-1991 | C | Bacone College | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 70 | June-Reg | Glen McNabb | Pittsburgh Pirates | 2B-SS | A+ | 1988-1992 | H | Millikan (Long Beach,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 71 | June-Reg | Jim Campanis | Seattle Mariners | C | AA | 1989-1994 | C | USC | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 72 | June-Reg | Tyler Green ** | Cincinnati Reds | P | MLB | 1991-2000 | H | Jefferson (Denver,CO) | SF | CO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 73 | June-Reg | John Briscoe | Oakland Athletics | P | MLB | 1988-2002 | C | Texas Christian University | SF | TX | -- | -- | -- | -- | -- | -- | -- | 5 | 5 | 5.67 | 2 | 140 | 115 | 2 |
| 1988 | 3 | 74 | June-Reg | Reuben Smiley | San Francisco Giants | OF | AAA | 1988-1997 | C | Los Angeles Community College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 75 | June-Reg | Joel Johnston | Kansas City Royals | P | MLB | 1988-1995 | H | Marple Newtown (Newton Square,PA) | SF | 6 | 1 | 0 | 0 | 0 | 0 | .333 | 3 | 5 | 4.31 | 2 | 86 | 61 | 0 | |
| 1988 | 3 | 76 | June-Reg | Marquis Grissom | Montreal Expos | OF-P | MLB | 1988-2005 | C | Florida A&M University | SF | FL | 8275 | 386 | 56 | 227 | 967 | 429 | .272 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 77 | June-Reg | Mike Harrison | Minnesota Twins | C | AA | 1989-1994 | H | Campolindo (Moraga,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 78 | June-Reg | Derrick Warren | New York Mets | OF | A- | 1992-1992 | H | Washington (Pensacola,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 79 | June-Reg | Doug Saunders | New York Mets | 2B | MLB | 1988-1997 | H | Esperanza (Anaheim,CA) | SF | CA | 67 | 2 | 0 | 0 | 0 | 0 | .209 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 80 | June-Reg | Charlie White | St. Louis Cardinals | OF | - | C | University of New Orleans | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 3 | 81 | June-Reg | Joe Andrzejewski | Milwaukee Brewers | P | A | 1988-1991 | H | Chesapeake (Pasadena,MD) | SF | MD | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 3 | 82 | June-Reg | Dave Weathers | Toronto Blue Jays | P | MLB | 1988-2009 | C | Motlow State Community College | SF | TN | 139 | 0 | 0 | 2 | 4 | 0 | .101 | 73 | 88 | 4.25 | 75 | 1376 | 976 | 69 |
| 1988 | 3 | 83 | June-Reg | Tookie Spann | Detroit Tigers | OF | AA | 1987-1993 | C | Tulane University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |