| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1986 | 2 | 29 | June-Reg | Mike Walker | Pittsburgh Pirates | P | MLB | 1986-1994 | C | University of Houston | SF | TX | -- | -- | -- | -- | -- | -- | -- | 0 | 3 | 7.36 | 0 | 15 | 5 | 3 |
| 1986 | 2 | 30 | June-Reg | Kevin Wickander | Cleveland Indians | P | MLB | 1986-1996 | C | Grand Canyon University | SF | AZ | 2 | 0 | 0 | 0 | 0 | 0 | .000 | 5 | 1 | 4.02 | 2 | 139 | 101 | 0 |
| 1986 | 2 | 31 | June-Reg | Kirt Manwaring | San Francisco Giants | C | MLB | 1986-1999 | C | Coastal Carolina University | SF | SC | 2982 | 111 | 20 | 21 | 278 | 10 | .246 | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 32 | June-Reg | Roger Pavlik | Texas Rangers | P | MLB | 1987-1998 | H | Aldine (Houston,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | 47 | 39 | 4.58 | 1 | 743 | 526 | 125 |
| 1986 | 2 | 33 | June-Reg | Brian Champion | Atlanta Braves | SS | AA | 1986-1991 | H | Corvallis (Corvallis,OR) | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 34 | June-Reg | Mark Ambrose | Milwaukee Brewers | P | AA | 1986-1991 | C | Vanderbilt University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 35 | June-Reg | Cliff Brantley | Philadelphia Phillies | P | MLB | 1986-1993 | H | Port Richmond (Staten Island,NY) | SF | NY | 22 | 0 | 1 | 0 | 1 | 0 | .136 | 4 | 8 | 4.25 | 0 | 108 | 57 | 14 |
| 1986 | 2 | 36 | June-Reg | Erik Hanson | Seattle Mariners | P | MLB | 1986-1999 | C | Wake Forest University | SF | NC | 39 | 1 | 0 | 0 | 3 | 0 | .154 | 89 | 84 | 4.15 | 0 | 1555 | 1175 | 238 |
| 1986 | 2 | 37 | June-Reg | Kraig Washington ** | Chicago Cubs | SS | A | 1988-1990 | H | Diamond Bar (Diamond Bar,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 38 | June-Reg | Jeff Bronkey | Minnesota Twins | P | MLB | 1986-1995 | C | Oklahoma State University | SF | OK | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 2 | 2 | 4.04 | 2 | 69 | 36 | 0 |
| 1986 | 2 | 39 | June-Reg | Will Taylor | San Diego Padres | OF | AAA | 1986-2001 | H | Alexandria (Alexandria,LA) | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 40 | June-Reg | Kevin Tapani | Oakland Athletics | P | MLB | 1986-2001 | C | Central Michigan University | SF | MI | 261 | 6 | 0 | 2 | 22 | 1 | .153 | 143 | 125 | 4.35 | 0 | 2265 | 1482 | 354 |
| 1986 | 2 | 41 | June-Reg | Mike Hook | Houston Astros | P | AA | 1986-1992 | H | Santana (Santee,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 42 | June-Reg | Paul Williams | Boston Red Sox | C | AA | 1986-1996 | H | M.B. Smiley (Houston,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 43 | June-Reg | Jeff Tabaka | Montreal Expos | P | MLB | 1983-2002 | C | Kent State University | SF | OH | 4 | 1 | 0 | 0 | 0 | 0 | .250 | 6 | 5 | 4.31 | 2 | 148 | 119 | 0 |
| 1986 | 2 | 44 | June-Reg | John Posey | Baltimore Orioles | OF | AAA | 1986-1990 | C | Campbell University | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 45 | June-Reg | Keith Thomas | Cincinnati Reds | OF | AA | 1986-2000 | H | Kenwood Academy (Chicago,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 46 | June-Reg | Milt Cuyler | Detroit Tigers | OF | MLB | 1986-2002 | H | Southwest Magnet (Macon,GA) | SF | GA | 1386 | 47 | 23 | 10 | 119 | 77 | .237 | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 47 | June-Reg | Dave Hansen | Los Angeles Dodgers | SS | MLB | 1986-2005 | H | Rowland (Rowland Heights,CA) | SF | CA | 1793 | 79 | 6 | 35 | 222 | 5 | .260 | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 48 | June-Reg | Carl Sullivan | Chicago White Sox | OF | AA | 1986-1991 | H | Brenham (Brenham,TX) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1986 | 2 | 49 | June-Reg | Fritz Polka | New York Mets | C | AA | 1986-1989 | C | Minnesota State University-Mankato | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 50 | June-Reg | Jeff Gay | California Angels | C | AA | 1986-1991 | H | Santana (Santee,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 51 | June-Reg | Reed Olmstead | St. Louis Cardinals | 1B-P | AA | 1986-1997 | H | Blair (Pasadena,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 52 | June-Reg | Darryl Robinson | Kansas City Royals | OF | AA | 1986-1998 | H | Whitney Young (Chicago,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 2 | 53 | June-Reg | Rich Scheid | New York Yankees | P | MLB | 1986-1997 | C | Seton Hall University | SF | NJ | 9 | 0 | 0 | 0 | 0 | 0 | .000 | 1 | 4 | 4.45 | 0 | 55 | 35 | 6 |
| 1986 | 2 | 54 | June-Reg | Steve Cummings | Toronto Blue Jays | P | MLB | 1986-1992 | C | University of Houston | SF | TX | -- | -- | -- | -- | -- | -- | -- | 2 | 0 | 3.78 | 0 | 33 | 12 | 4 |
| 1986 | 2 | 55 | June-Reg | Todd Zeile | St. Louis Cardinals | OF | MLB | 1986-2004 | C | UCLA | SF | CA | 7573 | 397 | 23 | 253 | 1110 | 53 | .265 | 0 | 0 | 22.50 | 0 | 2 | 1 | 0 |