| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2012 | 10 | 320 | June-Reg | Paul Sewald | New York Mets | P | A | 2009-2013 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2012 | 13 | 427 | June-Reg | James Pazos | New York Yankees | P | A- | 2011-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2012 | 18 | 560 | June-Reg | Paul Paez | New York Mets | P | NCAA | 2011-2011 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2012 | 34 | 1030 | June-Reg | Bryan Haar | Minnesota Twins | OF | RK | 2009-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2012 | 38 | 1159 | June-Reg | Calvin Drummond | Oakland Athletics | P | NCAA | 2011-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2011 | 6 | 198 | June-Reg | Chris Jensen | Colorado Rockies | P | A+ | 2009-2013 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2011 | 21 | 653 | June-Reg | Zack Kometani | San Diego Padres | 1B | AA | 2009-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2011 | 23 | 718 | June-Reg | Timothy Shibuya | Minnesota Twins | P | A | 2011-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2011 | 34 | 1027 | June-Reg | Calvin Drummond ** | Washington Nationals | P | NCAA | 2011-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2010 | 2 | 51 | June-Reg | Sammy Solis | Washington Nationals | P | A+ | 2008-2011 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2010 | 4 | 120 | June-Reg | Kyle Blair | Cleveland Indians | P | A+ | 2008-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2010 | 7 | 225 | June-Reg | Matt Hauser | Minnesota Twins | P | AA | 2007-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2010 | 9 | 271 | June-Reg | Zach Walters | Arizona Diamondbacks | SS | AAA | 2008-2013 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2010 | 12 | 365 | June-Reg | Matt Thomson | Oakland Athletics | P | A+ | 2008-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2010 | 13 | 395 | June-Reg | A.J. Griffin | Oakland Athletics | P | MLB | 2007-2013 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | 7 | 1 | 3.06 | 0 | 82 | 64 | 15 |
| 2010 | 20 | 625 | June-Reg | Mike Ferraro | New York Yankees | LF | A | 2008-2011 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2010 | 21 | 643 | June-Reg | James Meador | Detroit Tigers | 1B | A+ | 2007-2011 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2010 | 26 | 799 | June-Reg | Victor Sanchez | St. Louis Cardinals | 1B | A | 2008-2011 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2010 | 36 | 1105 | June-Reg | Nick McCoy | New York Yankees | C | A | 2006-2013 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2009 | 12 | 360 | June-Reg | Matt Thomson ** | Detroit Tigers | RHP | A+ | 2008-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2009 | 15 | 464 | June-Reg | Casey Schmidt | New York Mets | RHP | NCAA | 2007-2010 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2009 | 16 | 472 | June-Reg | Sean Nicol | Washington Nationals | SS | AAA | 2006-2013 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2009 | 34 | 1037 | June-Reg | A.J. Griffin ** | Philadelphia Phillies | RHP | MLB | 2007-2013 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2008 | 1 | 4 | June-Reg | Brian Matusz | Baltimore Orioles | P | MLB | 2006-2013 | C | University of San Diego | SF | CA | 8 | 0 | 0 | 0 | 0 | 0 | .125 | 22 | 33 | 5.36 | 0 | 368 | 300 | 68 |
| 2008 | 4 | 128 | June-Reg | Josh Romanski | Milwaukee Brewers | P | AAA | 2006-2013 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2008 | 8 | 241 | June-Reg | Ricardo Pecina | Washington Nationals | P | A+ | 2006-2010 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2008 | 35 | 1065 | June-Reg | Logan Gelbrich | San Diego Padres | C | A+ | 2005-2009 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2007 | 11 | 357 | June-Reg | Shane Buschini | San Diego Padres | OF | A | 2004-2008 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2007 | 13 | 423 | June-Reg | Jordan Abruzzo | New York Mets | C | A+ | 2004-2010 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2007 | 21 | 664 | June-Reg | Justin Snyder | New York Yankees | 2B | AAA | 2005-2011 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 2 | 47 | June-Reg | Josh Butler | Tampa Bay Rays | P | MLB | 2004-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 9.00 | 0 | 4 | 3 | 0 |
| 2006 | 9 | 282 | June-Reg | Nate Boman | Los Angeles Angels | P | NCAA | 2004-2005 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 11 | 336 | June-Reg | Steve Singleton | Minnesota Twins | SS | AAA | 2004-2011 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 509 | June-Reg | Keoni Ruth ** | Chicago Cubs | 2B | AAA | 2004-2010 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 39 | 1176 | June-Reg | Anthony Slama | Minnesota Twins | P | MLB | 2004-2013 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | 0 | 1 | 5.14 | 0 | 7 | 8 | 0 |
| 2006 | 39 | 1183 | June-Reg | Jordan Abruzzo ** | Boston Red Sox | C | A+ | 2004-2010 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2005 | 6 | 187 | June-Reg | Justin Blaine | Philadelphia Phillies | P | A | 2003-2007 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2005 | 28 | 838 | June-Reg | Matt Falk | Tampa Bay Rays | P | A | 2003-2008 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 8 | 233 | June-Reg | Freddy Sandoval | Anaheim Angels | SS | MLB | 2002-2012 | C | University of San Diego | SF | CA | 17 | 1 | 0 | 0 | 0 | 0 | .176 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 24 | 719 | June-Reg | Josh Hansen | Chicago White Sox | C | AA | 2001-2006 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 24 | 722 | June-Reg | Aaron Wilson | Philadelphia Phillies | P | A | 2000-2008 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 32 | 947 | June-Reg | Kyle Collins | Cleveland Indians | P | AA | 2003-2007 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 46 | 1380 | June-Reg | Tom Caple | Boston Red Sox | OF | RK | 2000-2004 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 44 | 1310 | June-Reg | Tom Caple ** | Boston Red Sox | OF | RK | 2000-2004 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2002 | 7 | 211 | June-Reg | David Bagley | Los Angeles Dodgers | DH | A+ | 2002-2004 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2002 | 7 | 212 | June-Reg | Ricky Barrett | Minnesota Twins | P-C | AAA | 2000-2012 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2002 | 34 | 1032 | June-Reg | Mike McCoy | St. Louis Cardinals | SS | MLB | 2000-2013 | C | University of San Diego | SF | CA | 336 | 13 | 0 | 3 | 20 | 21 | .190 | 0 | 0 | 0.00 | 0 | 1 | 0 | 0 |
| 2001 | 5 | 150 | June-Reg | Greg Sain | San Diego Padres | IF | AAA | 2001-2006 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 12 | 367 | June-Reg | Ryan Hamilton ** | Houston Astros | P | Ind | 2003-2006 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 27 | 799 | June-Reg | Kevin Reese | San Diego Padres | OF | MLB | 1997-2007 | C | University of San Diego | SF | CA | 13 | 0 | 0 | 0 | 1 | 1 | .385 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 30 | 886 | June-Reg | Edgar Gonzalez | Tampa Bay Rays | IF | MLB | 1998-2012 | C | University of San Diego | SF | CA | 478 | 23 | 2 | 11 | 51 | 2 | .255 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 49 | 1417 | June-Reg | Andy Martin | Tampa Bay Rays | P | NCAA | 2004-2005 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 20 | 614 | June-Reg | Ryan Hamilton ** | Los Angeles Dodgers | P | Ind | 2003-2006 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 34 | 1039 | June-Reg | Dan Giese | Boston Red Sox | P | MLB | 1999-2010 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | 1 | 8 | 4.22 | 0 | 75 | 47 | 4 |
| 1999 | 47 | 1399 | June-Reg | Martin Hayes | Texas Rangers | P | - | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1997 | 25 | 747 | June-Reg | Jeb Dougherty | Anaheim Angels | OF | AA | 1997-2000 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1995 | 18 | 485 | June-Reg | Rex Burgus | Florida Marlins | p | AAA | 1995-1999 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1994 | 12 | 322 | June-Reg | Mike Saipe | Colorado Rockies | p | MLB | 1994-2005 | C | University of San Diego | SF | CA | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 0 | 1 | 10.80 | 0 | 10 | 2 | 2 |
| 1993 | 38 | 1068 | June-Reg | Kevin Herde | St. Louis Cardinals | C | RK | 1993-1993 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1992 | 39 | 1104 | June-Reg | Sean Gousha | Florida Marlins | Of | AAA | 1992-1995 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1991 | 15 | 400 | June-Reg | Jim Ferguson | Montreal Expos | p | A+ | 1991-1993 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 13 | 335 | June-Reg | David Rolls | Kansas City Royals | C | AA | 1988-1994 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 19 | 475 | June-Reg | Sean Baron | Cleveland Indians | 1B | A | 1988-1988 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1987 | 19 | 494 | June-Reg | Sean Baron ** | Detroit Tigers | 1B | A | 1988-1988 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1987 | 29 | 748 | June-Reg | Robbie Rogers | Cleveland Indians | SS | A+ | 1987-1988 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 14 | 351 | June-Reg | David Jacas | Minnesota Twins | OF | AAA | 1986-1992 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1985 | 20 | 516 | June-Reg | David Jacas ** | New York Mets | OF | AAA | 1986-1992 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1985 | 29 | 727 | June-Reg | Paul Van Stone | San Francisco Giants | 2B-SS | AA | 1985-1987 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1984 | 26 | 656 | June-Reg | Eric Bennett | Philadelphia Phillies | C | A+ | 1984-1985 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1983 | 14 | 363 | June-Reg | Steve Sciacca | California Angels | C | A+ | 1983-1985 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1982 | 7 | 184 | June-Reg | Glenn Godwin | Oakland Athletics | P | A | 1982-1984 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1981 | 2 | 31 | June-Reg | Bill Pinkham | Toronto Blue Jays | C | AA | 1981-1984 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1981 | 24 | 615 | June-Reg | Bart Brainard | Milwaukee Brewers | C-OF | A+ | 1981-1981 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1978 | 36 | 745 | June-Reg | Tim Ronan | Pittsburgh Pirates | p | - | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1977 | 20 | 507 | June-Reg | Casey Clark | Pittsburgh Pirates | OF | A+ | 1977-1978 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1976 | 34 | 695 | June-Reg | Brian Bullas | Oakland Athletics | Of-2B | - | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1975 | 12 | 275 | June-Reg | Ted Schultz | Chicago White Sox | SS | - | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1973 | 4 | 85 | June-Reg | Kerry Dineen | New York Yankees | OF | MLB | 1975-1979 | C | University of San Diego | SF | CA | 37 | 2 | 0 | 0 | 2 | 1 | .324 | -- | -- | -- | -- | -- | -- | -- |
| 1971 | 18 | 408 | June-Reg | Gary Myron | San Diego Padres | p | - | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1971 | 1 | 4 | Jan-Reg | John Wathan | Kansas City Royals | C | MLB | 1971-1985 | C | University of San Diego | SF | CA | 2505 | 90 | 25 | 21 | 261 | 105 | .262 | -- | -- | -- | -- | -- | -- | -- |
| 1967 | 10 | 173 | June-Sec | Lucky Thompson | Los Angeles Dodgers | SS | - | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1966 | 18 | 342 | June-Reg | Ed Green | Kansas City Athletics | OF | - | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |