| 1001. | Chuck Huggins | P | ARI | 21 | 5/6/1986 | 6-1 | 185 | L-L | College | | University of California-Santa Barbara | 95 |
| 1002. | Mike Loberg | OF | SF | 22 | 3/24/1985 | 6-4 | 225 | L-R | - | | Augustana College (South Dakota) | 1 |
| 1003. | Chris Pecora | OF | SEA | 20 | 9/22/1986 | 6-2 | 200 | S-R | - | | North Carolina Wesleyan College | 11 |
| 1006. | Craig Kimbrel | P | ATL | 19 | 5/28/1988 | 5-11 | 205 | R-R | - | | Wallace State Community College (AL) | 7 |
| 1007. | Brodie Pullen | 3B | CIN | 18 | 10/26/1988 | 6-0 | 195 | R-R | Rookie | | Calhoun High School (Calhoun,GA) | 6 |
| 1009. | Cody Phipps | OF | HOU | 18 | 4/24/1989 | 6-3 | 205 | R-R | Rookie | | Vauxhall High School (Crows Nest Pass,AB) | |
| 1010. | Josh Fritsche | P | STL | 22 | 11/22/1984 | 6-0 | 225 | R-L | A- | | Oklahoma State University | 193 |
| 1014. | A.J. Schugel | 3B | SD | 18 | 6/27/1989 | 6-0 | 180 | R-R | - | | Mountain Vista High School (Highlands Ranch,CO) | |
| 1015. | Donato Giovanatto | OF | LAA | 22 | 10/20/1984 | 6-1 | 195 | R-R | A | | San Jose State University | 86 |
| 1017. | John Quine | P | OAK | 23 | 10/8/1983 | 6-0 | 180 | R-R | A- | | University of San Francisco | 63 |