| 1 | 5 | June-Reg | Matt Wieters | C | 21 | 6-4 | 225 | B | R | MLB | 2009-2009 | Georgia Tech | $6,000,000 |
| 4 | 129 | June-Reg | Tim Bascom | P | 22 | 6-2 | 200 | R | R | AA | | Bradenton (Anna Maria,FL) | $200,000 |
| 5 | 159 | June-Reg | Jacob Arrieta | P | 21 | 6-4 | 225 | R | R | AAA | | Texas Christian University | $1,100,000 |
| 6 | 189 | June-Reg | Joe Mahoney | 1B | 20 | 6-7 | 255 | L | L | A+ | | University of Richmond | $110,000 |
| 7 | 219 | June-Reg | Matt Angle | OF | 21 | 5-10 | 175 | L | R | AA | | Ohio State University | $110,000 |
| 8 | 249 | June-Reg | Shane Matthews | P | 22 | 6-3 | 210 | R | R | - | | East Carolina University | $87,500 |
| 9 | 279 | June-Reg | Malcolm Crowley | SS | 20 | 5-10 | 180 | L | R | Rookie | | Galveston College | $65,000 |
| 10 | 309** | June-Reg | Eryk Mcconnell | P | 21 | 6-1 | 185 | R | R | A | | North Carolina State University | |
| 11 | 339 | June-Reg | Robbie Widlansky | OF | 22 | 6-2 | 185 | B | R | A+ | | Florida Atlantic University | |
| 12 | 369 | June-Reg | Wally Crancer | OF | 22 | 6-0 | 215 | L | R | A+ | | Georgia Tech | |
| 13 | 399 | June-Reg | Jordan Wolf | C | 22 | 6-1 | 195 | R | R | A | | Xavier University | |
| 14 | 429 | June-Reg | Hank Williamson | P | 21 | 6-5 | 225 | R | R | AAA | | San Jacinto College | |
| 15 | 459 | June-Reg | Tyrone Hambly | 3B | 22 | 6-0 | 230 | R | R | College | | Grayson County College | |
| 16 | 489 | June-Reg | Tyler Kolodny | 3B | 19 | 6-2 | 225 | R | R | A | | El Camino Real (Woodland Hills,CA) | |
| 17 | 519 | June-Reg | Jason White | SS | 23 | 6-1 | 175 | L | R | AA | | University of Iowa | |
| 18 | 549 | June-Reg | John Mariotti | P | 22 | 6-0 | 225 | L | R | AA | | Coastal Carolina University | |
| 19 | 579 | June-Reg | Brian Parker | P | 21 | 6-4 | 195 | R | R | AA | | Lewis-Clark State College | |
| 20 | 609 | June-Reg | Sean Gleason | P | 21 | 6-0 | 190 | L | R | AA | | St. Mary's College of California | |
| 21 | 639 | June-Reg | Scott Mueller | P | 21 | 6-4 | 200 | R | R | A+ | | Arizona State University | |
| 22 | 669 | June-Reg | Colin Allen | P | 20 | 6-1 | 175 | R | R | A | | Lamar Community College | |
| 23 | 699 | June-Reg | Tony Kirbis | P | 22 | 6-2 | 220 | R | R | A- | | Point Loma Nazarene University | |
| 24 | 729 | June-Reg | Dan Klein | P | 18 | 6-3 | 195 | R | R | College | | Servite (Anaheim,CA) | |
| 25 | 759 | June-Reg | Cliff Flagello | P | 22 | 5-10 | 200 | R | R | A+ | | Shorter College | |
| 26 | 789 | June-Reg | Justin Moore | P | 17 | 6-3 | 190 | R | R | Rookie | | Chancellor (Fredericksburg,VA) | |
| 27 | 819 | June-Reg | Kraig Binick | OF | 22 | 5-11 | 180 | R | L | AA | | New York Institute of Technology | |
| 28 | 849 | June-Reg | Stephen Procner | P | 22 | 6-2 | 200 | L | L | A | | Cleveland State University | |
| 29 | 879 | June-Reg | Danny Heller | OF | 20 | 6-3 | 210 | L | L | Rookie | | Los Angeles Pierce College | |
| 30 | 909 | June-Reg | Brandon Cooney | P | 21 | 6-6 | 240 | R | R | A+ | | Florida Atlantic University | |
| 31 | 939 | June-Reg | Matt Tucker | 3B | 24 | 6-1 | 180 | B | R | A+ | | Dallas Baptist University | |
| 32 | 968 | June-Reg | Pete Andrelczyk | P | 21 | 6-1 | 190 | R | R | A+ | | Coastal Carolina University | |
| 33 | 997 | June-Reg | Jacob Julius | OF | 21 | 6-0 | 185 | L | L | A | | University of Arkansas | |
| 34 | 1026 | June-Reg | Kyle Touchatt | P | 22 | 6-2 | 200 | R | R | A- | | Wichita State University | |
| 35 | 1055 | June-Reg | Eric Perlozzo | 2B | 22 | 5-9 | 175 | R | R | A+ | | Shippensburg University of Pennsylvania | |
| 36 | 1084 | June-Reg | Calvin Lester | OF | 23 | 6-1 | 180 | B | R | A | | Prairie View A&M University | |
| 37 | 1112 | June-Reg | Merrill Kelly | P | 18 | 6-1 | 170 | R | R | - | | Desert Mountain (Scottsdale,AZ) | |
| 38 | 1140 | June-Reg | Michael Harrington | OF | 21 | 6-0 | 195 | L | R | A | | College of Charleston | |
| 39 | 1168 | June-Reg | Joe Yermal | P | 18 | 6-7 | 241 | R | R | College | | McDonogh (Owings Mills,MD) | |
| 40 | 1196 | June-Reg | Aaron Odom | P | 22 | 6-0 | 165 | L | L | A | | Texas Tech University | |
| 41 | 1222 | June-Reg | Russell Wilson | 2B/SS | 18 | 6-0 | 200 | R | R | College | | The Collegiate School (Richmond,VA) | |
| 42 | 1248 | June-Reg | Joseph Digeronimo | SS | 22 | 5-11 | 180 | R | R | Rookie | | Wagner College | |
| 43 | 1274 | June-Reg | Cole McCurry | P | 21 | 6-1 | 180 | R | L | A | | Tennessee Wesleyan College | |
| 44 | 1300** | June-Reg | Travis Dirk | P | 20 | 6-4 | 230 | R | R | College | | Navarro College | |
| 45 | 1326 | June-Reg | Jacob Smith | P | 21 | 6-4 | 210 | L | L | A | | Brescia University | |
| 46 | 1350 | June-Reg | Lee Ellis | OF | 22 | 6-2 | 210 | R | R | A- | | California Lutheran University | |
| 47 | 1373 | June-Reg | Preston Pehrson | C | 22 | 6-2 | 215 | L | R | Rookie | | Towson University | |
| 48 | 1395 | June-Reg | Nick Ray | OF | 21 | 5-11 | 180 | L | L | Rookie | | Northwest Nazarene University | |
| 49 | 1416 | June-Reg | Tyler Newsome | OF | 18 | 6-1 | 195 | L | L | College | | Marist (Chicago,IL) | |
| 50 | 1437 | June-Reg | Mike Gioioso | SS | 22 | 6-0 | 190 | R | R | A- | | Mount Saint Mary College | |