| 1 | 6 | June-Reg | Jeremy Sowers | P | 21 | 6-1 | 165 | L | L | MLB | 2006-2009 | Vanderbilt University | $2,475,000 |
| 2 | 47 | June-Reg | Justin Hoyman | P | 22 | 6-4 | 175 | R | R | A | | University of Florida | $725,000 |
| 3 | 77 | June-Reg | Scott Lewis | P | 20 | 6-0 | 185 | L | L | MLB | 2008-2009 | Ohio State University | $460,000 |
| 4 | 107 | June-Reg | Chuck Lofgren | P | 18 | 6-3 | 190 | L | L | AAA | | Junipero Serra (San Mateo,CA) | $650,000 |
| 5 | 137 | June-Reg | Mike Butia | OF | 21 | 6-2 | 215 | L | R | A+ | | James Madison University | $210,000 |
| 6 | 167 | June-Reg | Cody Bunkelman | P | 19 | 6-3 | 200 | R | R | A+ | | Itasca Community College | $110,000 |
| 7 | 197 | June-Reg | Mark Jecmen | P | 21 | 6-8 | 235 | R | R | A | | Stanford University | $150,000 |
| 8 | 227 | June-Reg | Justin Pekarek | P | 23 | 6-4 | 195 | R | L | AA | | University of Nebraska | $20,000 |
| 9 | 257 | June-Reg | Chris Niesel | P | 21 | 5-11 | 195 | R | R | AAA | | University of Notre Dame | $112,500 |
| 10 | 287** | June-Reg | Reinaldo Alicano | OF | | | | | | - | | Josefina Barcelo (Guaynabo,PR) | |
| 11 | 317** | June-Reg | Brian Logan | P | 18 | 5-11 | 185 | L | L | Ind | | Varina (Richmond,VA) | |
| 12 | 347** | June-Reg | Jordan Chambless | P | 19 | 6-2 | 200 | R | R | College | | Calallen (Corpus Christi,TX) | |
| 13 | 377 | June-Reg | Jason Denham | OF | 18 | 6-0 | 170 | L | L | A+ | | Deer Valley (Antioch,CA) | |
| 14 | 407** | June-Reg | Jeff Sues | P | 21 | 6-4 | 220 | R | R | AAA | | Vanderbilt University | |
| 15 | 437 | June-Reg | Brian Finegan | SS | 22 | 6-1 | 185 | R | R | AAA | | University of Hawaii | |
| 16 | 467 | June-Reg | Josh Williamson | P | | | | | | College | | Columbia Basin College | |
| 17 | 497 | June-Reg | Marshall Szabo | 2B | 21 | 5-10 | 180 | B | R | A | | University of Georgia | |
| 18 | 527 | June-Reg | Danny Calvert | P | 19 | 6-5 | 190 | R | R | - | | Hutchinson Community College | |
| 19 | 557 | June-Reg | Chris Gimenez | OF | 21 | 6-2 | 190 | R | R | MLB | 2009-2009 | University of Nevada | |
| 20 | 587 | June-Reg | Derrick Peterson | 3B | 22 | 6-3 | 190 | R | R | A | | Eastern Michigan University | |
| 21 | 617 | June-Reg | Carlton Smith | P | 18 | 6-1 | 200 | L | R | AA | | Piscataway (Piscataway,NJ) | |
| 22 | 647** | June-Reg | Jeff Corsaletti | OF | 21 | 6-0 | 190 | L | R | AAA | | University of Florida | |
| 23 | 677 | June-Reg | Michael Storey | P | 18 | 6-3 | 189 | B | L | Ind | | Bellevue West (Bellevue,NE) | |
| 24 | 707 | June-Reg | Wyatt Toregas | C | 21 | 5-11 | 200 | R | R | MLB | 2009-2009 | Virginia Tech | |
| 25 | 737 | June-Reg | David Newmann | P | 19 | 6-2 | 200 | R | L | A+ | | San Jacinto College | |
| 26 | 767 | June-Reg | Justin Holmes | SS | 22 | 5-11 | 185 | R | R | A | | University of Georgia | |
| 27 | 797 | June-Reg | Adrian Schau | P | 22 | 6-2 | 200 | R | R | A | | Villanova University | |
| 28 | 827 | June-Reg | Doodle Hicks | P | | | | | | - | | Virginia (Bristol,VA) | |
| 29 | 857 | June-Reg | P.J. Hiser | OF | 22 | 6-1 | 195 | R | R | A | | University of Pittsburgh | |
| 30 | 887 | June-Reg | Alfred Ard | OF | 21 | 6-0 | 185 | R | R | Rookie | | Southern University | |
| 31 | 917 | June-Reg | Doug Pickens | C | 19 | 6-0 | 190 | R | R | AA | | Brother Rice (Bloomfield Hills,MI) | |
| 32 | 947 | June-Reg | Kyle Collins | P | 22 | 6-1 | 185 | R | R | AA | | University of San Diego | |
| 33 | 977 | June-Reg | Paul Lubrano | P | 22 | 6-1 | 170 | L | L | A+ | | University of Georgia | |
| 34 | 1007** | June-Reg | Ashton Shewey | P | | | | | | College | | Payson (Payson,AZ) | |
| 35 | 1037 | June-Reg | Ryan Knippschild | P | 21 | 6-1 | 195 | L | L | AA | | University of Kansas | |
| 36 | 1067** | June-Reg | Jeff Kamrath | P | 22 | 6-3 | 210 | R | R | AA | | University of Virginia | |
| 37 | 1097 | June-Reg | Blake Gill | 2B | 22 | 5-11 | 190 | L | R | Ind | | Louisiana State University | |
| 38 | 1127 | June-Reg | Jose Amaya | P | 22 | 6-2 | 205 | R | R | AAA | | San Jose State University | |
| 39 | 1157 | June-Reg | Preston Clark | C | 18 | 5-11 | 210 | R | R | College | | Rockwall-Heath (Rockwall,TX) | |
| 40 | 1187 | June-Reg | Dustin Roddy | P | 21 | 6-2 | 195 | R | R | A | | Nicholls State University | |
| 41 | 1217 | June-Reg | David Coulon | P | 18 | 6-0 | 200 | L | L | College | | Hanford (Hanford,CA) | |
| 42 | 1246 | June-Reg | Josh Harris | P | 23 | 6-0 | 205 | R | R | AA | | Lamar University | |
| 43 | 1275** | June-Reg | Trevor Mortensen | OF | 21 | 5-10 | 190 | R | R | A+ | | Santa Ana College | $0 |
| 44 | 1304 | June-Reg | Phil Shirek | P | | | | | | College | | University of Nebraska | |
| 45 | 1333 | June-Reg | Tony Sipp | P | 20 | 6-0 | 185 | L | L | MLB | 2009-2009 | Clemson University | $130,000 |
| 46 | 1362 | June-Reg | Chris Sosa | OF | | | | | | - | | West Hills College | |
| 47 | 1391 | June-Reg | Tyler Beranek | 1B | | | | | | College | | Waukesha South (Waukesha,WI) | |
| 48 | 1420 | June-Reg | Brian Winings | P | 21 | 6-2 | 195 | R | R | Ind | | University of Pennsylvania | |
| 49 | 1448 | June-Reg | Jose Chavez | SS | 19 | 5-10 | 170 | B | R | AAA | | Santa Ana College | |
| 50 | 1476 | June-Reg | Tim Battaglia | P | | | | | | College | | University of Minnesota-Duluth | |