| 1 | 4 | June-Reg | Tim Stauffer | P | 21 | 6-2 | 205 | R | R | MLB | 2005-2009 | University of Richmond | $750,000 |
| 2 | 41 | June-Reg | Daniel Moore | P | 21 | 6-6 | 215 | R | L | A | | University of North Carolina | $800,000 |
| 3 | 71 | June-Reg | Colt Morton | C | 21 | 6-5 | 225 | R | R | MLB | 2007-2008 | North Carolina State University | $500,000 |
| 4 | 101 | June-Reg | Peter Stonard | SS | 21 | 6-0 | 195 | L | R | A+ | | San Diego State University | $280,000 |
| 5 | 131 | June-Reg | Billy Hogan | SS | 20 | 6-3 | 200 | R | R | A | | Chandler-Gilbert Community College | $215,000 |
| 6 | 161** | June-Reg | Cory Patton | OF | 21 | 5-9 | 210 | L | L | A+ | | Texas A&M University | |
| 7 | 191 | June-Reg | Clark Girardeau | P | 21 | 6-5 | 210 | R | R | A+ | | University of South Alabama | $130,000 |
| 8 | 221 | June-Reg | Dirk Hayhurst | P | 22 | 6-3 | 190 | L | R | MLB | 2008-2009 | Kent State University | $15,000 |
| 9 | 251 | June-Reg | Matt Lauderdale | C | 22 | 5-10 | 205 | R | R | AA | | College of Charleston | $10,000 |
| 10 | 281 | June-Reg | Fernando Valenzuela | 1B | 20 | 5-11 | 210 | L | L | AAA | | UNLV | $60,000 |
| 11 | 311 | June-Reg | Justin Smyres | SS | 22 | 6-0 | 175 | R | R | A+ | | Cal State Fullerton | |
| 12 | 341 | June-Reg | Jeff Leise | OF | 22 | 5-10 | 165 | L | L | A- | | University of Nebraska | |
| 13 | 371 | June-Reg | Ryan Johnson | OF | 22 | 6-2 | 205 | L | L | A | | Wake Forest University | |
| 14 | 401** | June-Reg | Steve Gendron | SS | 21 | 6-3 | 199 | R | R | AA | | Mississippi State University | |
| 15 | 431 | June-Reg | Chuck Bechtel | P | 23 | 6-4 | 215 | R | R | A+ | | Marist College | |
| 16 | 461** | June-Reg | Zane Carlson | P | 22 | 5-10 | 180 | R | R | A | | Baylor University | |
| 17 | 491 | June-Reg | Justin Sokol | P | 19 | 6-5 | 215 | R | R | - | | Iowa Central Community College | |
| 18 | 521 | June-Reg | Greg Conden | P | 22 | 6-3 | 220 | R | R | A | | George Washington University | |
| 19 | 551** | June-Reg | Jesse Estrada | P | 19 | 6-8 | 280 | R | R | AAA | | Grayson County College | |
| 20 | 581 | June-Reg | Leo Rosales | P | 22 | 6-1 | 190 | R | R | MLB | 2008-2009 | Cal State Northridge | |
| 21 | 611 | June-Reg | Brett Burnham | SS | 22 | 5-10 | 190 | R | R | A- | | University of Connecticut | |
| 22 | 641 | June-Reg | Brandon Kaye | 1B | 22 | 6-2 | 215 | L | L | Ind | | Oklahoma City University | |
| 23 | 671 | June-Reg | Eddie Bonine | P | 22 | 6-5 | 205 | R | R | MLB | 2008-2009 | University of Nevada | |
| 24 | 701 | June-Reg | Ronnie Robinson | P | 22 | 6-3 | 185 | R | R | A | | Georgia State University | |
| 25 | 731 | June-Reg | Chuckie Caufield | OF | 19 | 6-1 | 180 | B | R | AA | | Seminole State College | |
| 26 | 761 | June-Reg | Steve Wright | P | 18 | 6-1 | 200 | R | R | AAA | | Valley View (Moreno Valley,CA) | |
| 27 | 791 | June-Reg | Bo Banach | 3B | 20 | 6-1 | 200 | R | R | Ind | | Los Angeles Harbor College | |
| 28 | 821 | June-Reg | Corey McCoy | OF | 19 | 6-0 | 180 | R | R | - | | University of Arkansas-Fort Smith | |
| 29 | 851 | June-Reg | Steven Delabar | P | 19 | 6-4 | 220 | R | R | A+ | | Volunteer State Community College | |
| 30 | 881** | June-Reg | Ben Cox | P | 21 | 6-2 | 210 | L | R | AA | | San Jacinto College | |
| 31 | 911 | June-Reg | Alan Tungate | P | 18 | 6-2 | 205 | L | R | - | | St. Catharine College | |
| 32 | 941 | June-Reg | Chad Catalano | P | 19 | 6-2 | 180 | R | R | Ind | | Pearl River Community College | |
| 33 | 971** | June-Reg | Colin Carter | P | 18 | 6-0 | 185 | L | L | - | | Liberty Christian (Argyle,TX) | |
| 34 | 1001 | June-Reg | Chris Rayborn | P | 19 | 6-3 | 200 | R | R | Ind | | Meridian Community College | |
| 35 | 1031 | June-Reg | Dean Turner | P | 20 | 6-2 | 185 | R | R | - | | Bellevue Community College | |
| 36 | 1061 | June-Reg | Josh Sawatzky | P | 18 | 6-5 | 185 | R | R | College | | W.C. Milwaukee (Altona,Canada) | |
| 37 | 1091 | June-Reg | Thomas Skipper | OF | 18 | 6-2 | 195 | B | R | - | | Sandy Union (Sandy,OR) | |
| 38 | 1121 | June-Reg | Ryan Klatt | P | 21 | 6-1 | 185 | L | R | AA | | Biola University | |
| 39 | 1151 | June-Reg | Ryan McGraw | OF | 22 | 5-7 | 180 | B | R | Ind | | Coastal Carolina University | |
| 40 | 1181** | June-Reg | Zach Shadle | P | 18 | 6-4 | 195 | R | R | - | | Bethel (Spanaway,WA) | |
| 41 | 1211** | June-Reg | Pat Warfle | OF | 17 | 6-0 | 180 | R | R | Ind | | Eau Gallie (Melbourne,FL) | |
| 42 | 1240 | June-Reg | Nigel Goodwin | P | 19 | 6-5 | 200 | R | R | - | | Spokane Falls Community College | |
| 43 | 1269 | June-Reg | Nathan Rogers | P | 20 | 6-3 | 215 | L | L | Rookie | | Connors State College | |
| 44 | 1297 | June-Reg | Justin Wichert | P | 20 | 6-6 | 215 | R | R | Ind | | Cowley College | |
| 45 | 1325 | June-Reg | Clay Collier | C | 18 | 6-3 | 210 | R | R | - | | Edmond North (Edmond,OK) | |
| 46 | 1352 | June-Reg | Brian Edwards | OF | 22 | 6-3 | 190 | R | R | Rookie | | Metropolitan State College of Denver | |
| 47 | 1379 | June-Reg | Bryan Eubanks | P | 20 | 6-2 | 200 | R | R | - | | Meridian Community College | |
| 48 | 1406 | June-Reg | Tom Vincent | OF | 21 | 6-3 | 215 | L | R | A | | - | |
| 49 | 1432 | June-Reg | Nate Simms | C | 18 | 6-1 | 180 | R | R | - | | Grand Junction (Grand Junction,CO) | |
| 50 | 1458 | June-Reg | Sean Rierson | P | 22 | 6-3 | 197 | R | R | College | | University of Arizona | |