| 1 | 8 | June-Reg | Paul Maholm | P | 21 | 6-2 | 215 | L | L | MLB | 2005-2009 | Mississippi State University | $2,200,000 |
| 2 | 45 | June-Reg | Tom Gorzelanny | P | 20 | 6-3 | 200 | B | L | MLB | 2005-2009 | Triton College | $775,000 |
| 3 | 75 | June-Reg | Steve Lerud | C | 18 | 6-1 | 205 | L | R | AA | | Galena (Reno,NV) | $512,500 |
| 4 | 105 | June-Reg | Kyle Pearson | P | 18 | 6-1 | 180 | R | R | AA | | Mosley (Panama City,FL) | $335,000 |
| 5 | 135 | June-Reg | Craig Stansberry | 3B | 21 | 6-0 | 185 | R | R | MLB | 2007-2009 | Rice University | $215,000 |
| 6 | 165** | June-Reg | C.J. Smith | 1B | 21 | 6-4 | 212 | R | R | A | | University of Florida | |
| 7 | 195 | June-Reg | Russ Johnson | P | 18 | 6-2 | 200 | L | R | A+ | | Benjamin Russell (Alexander City,AL) | $130,500 |
| 8 | 225 | June-Reg | Sergio Silva | P | 21 | 6-4 | 205 | R | R | A | | University of the Pacific | $85,000 |
| 9 | 255 | June-Reg | Kent Wulf | 2B | 18 | 5-11 | 175 | R | R | A- | | Quartz Hill (Quartz Hill,CA) | $85,000 |
| 10 | 285 | June-Reg | John Peabody | OF | 17 | 6-4 | 215 | R | R | A- | | Rancho Bernardo (San Diego,CA) | $60,000 |
| 11 | 315 | June-Reg | John Santiago | 3B | 18 | 6-0 | 160 | R | R | A | | Nuestra Senora Del Carmen (Nuestra Senora Del Carmen,Trujillo Alto,PR) | |
| 12 | 345 | June-Reg | Adam Boeve | OF | 23 | 6-1 | 205 | R | R | AAA | | University of Northern Iowa | |
| 13 | 375 | June-Reg | Lee Land | P | 18 | 6-2 | 220 | R | R | A- | | Riverside (Durham,NC) | |
| 14 | 405 | June-Reg | Jacob Cuffman | P | 18 | 6-4 | 190 | R | R | A+ | | Butler (Butler,PA) | |
| 15 | 435 | June-Reg | Dustin Molleken | P | 18 | 6-4 | 210 | L | R | AA | | Lethbridge Community College | |
| 16 | 465 | June-Reg | Justin Harris | SS | 22 | 6-0 | 170 | R | R | A+ | | University of South Carolina | |
| 17 | 495 | June-Reg | Steven Herce | P | 22 | 6-3 | 220 | R | R | A- | | Rice University | |
| 18 | 525 | June-Reg | Pedro Powell | OF | 19 | 5-7 | 150 | R | R | AA | | Middle Georgia College | |
| 19 | 555 | June-Reg | Dallas Buck | P | 18 | 6-2 | 195 | R | R | AA | | Newberg (Newberg,OR) | |
| 20 | 585 | June-Reg | Brett Holmes | OF | 22 | 6-2 | 190 | R | R | A | | Auburn University-Montgomery | |
| 21 | 615** | June-Reg | Clayton Hamilton | P | 21 | 6-5 | 200 | R | R | AAA | | Penn State University | |
| 22 | 645 | June-Reg | Chris Hernandez | P | 22 | 6-0 | 195 | R | R | AAA | | University of South Carolina | |
| 23 | 675 | June-Reg | Gregory Picart | SS | 17 | 5-11 | 155 | B | R | A+ | | Adela Brenes Texidor (Adela Brenes Texidor,Guayama,PR) | |
| 24 | 705 | June-Reg | Josh Sharpless | P | 22 | 6-6 | 230 | R | R | MLB | 2006-2007 | Community College of Allegheny County | |
| 25 | 735 | June-Reg | Matt Downs | P | 19 | 6-2 | 190 | R | R | MLB | 2009-2009 | Shelton State Community College | |
| 26 | 765 | June-Reg | Owen Williams | P | 19 | 6-1 | 180 | L | L | - | | Edmonds Community College | |
| 27 | 795 | June-Reg | Clegg Snipes | P | 18 | 6-2 | 195 | R | R | Ind | | Lincoln (Tallahassee,FL) | |
| 28 | 825 | June-Reg | Matthew Creighton | P | 19 | 6-5 | 200 | L | L | Ind | | Meridian Community College | |
| 29 | 855 | June-Reg | Jimmy Van Ostrand | OF | 18 | 6-4 | 210 | R | R | AA | | Allan Hancock College | |
| 30 | 885 | June-Reg | Joey Friddle | SS | 19 | 5-11 | 165 | R | R | College | | Young Harris College | |
| 31 | 915 | June-Reg | Cody Doonan | P | 19 | 6-2 | 180 | R | R | - | | Kirkwood Community College | |
| 32 | 945** | June-Reg | Sean Coughlin | C | 18 | 6-1 | 215 | L | R | AA | | Golden (Golden,CO) | |
| 33 | 975 | June-Reg | Nicholas Palmisano | 1B | 19 | 6-2 | 215 | L | L | - | | Broward College | |
| 34 | 1005** | June-Reg | Jeremy Horst | P | 17 | 6-4 | 225 | L | L | AA | | Des Lacs-Burlington (Des Lacs,ND) | |
| 35 | 1035 | June-Reg | Nick Colborn | P | 19 | 6-4 | 225 | R | R | - | | Blue Mountain Community College | |
| 36 | 1065 | June-Reg | Andy Mudd | OF | 18 | 6-3 | 180 | L | R | - | | S.C. (S.C.) | |
| 37 | 1095 | June-Reg | Daniel Brown | P | 18 | 6-3 | 200 | L | L | - | | Bakersfield College | |
| 38 | 1125** | June-Reg | Bobby Felmy | OF | 19 | 5-10 | 194 | L | L | AA | | Georgia Perimeter College | |
| 39 | 1155 | June-Reg | Peter Wiggins | P | 18 | 6-0 | 180 | R | R | College | | Patterson (Patterson,LA) | |
| 40 | 1185** | June-Reg | Christian Romple | C | 18 | 6-3 | 195 | R | R | - | | West Valley (Yakima,WA) | |
| 41 | 1215 | June-Reg | Chandler Miller | P | 18 | 6-5 | 190 | R | R | College | | Young Harris College | |
| 42 | 1244** | June-Reg | Tony Snow | P | 19 | 6-4 | 210 | R | R | A- | | Edmonds Community College | |
| 43 | 1273** | June-Reg | Lance Scoggins | P | 18 | 6-1 | 165 | L | L | College | | Bolton (Arlington,TN) | |
| 44 | 1301 | June-Reg | Troy Harrington | P | 18 | 6-4 | 180 | R | R | - | | Palmdale (Palmdale,CA) | |
| 45 | 1329 | June-Reg | Domingo Reyes | P | 18 | 6-5 | 185 | L | L | - | | Brito (Miami,FL) | |
| 46 | 1356 | June-Reg | Cody Lovejoy | C | 17 | 6-5 | 220 | R | R | - | | Cypress (Cypress,CA) | |
| 47 | 1383 | June-Reg | Bryan Henry | P | 18 | 6-3 | 215 | R | R | A+ | | Florida State University (Tallahassee,FL) | |
| 48 | 1410 | June-Reg | Antonio Westfield | OF | 18 | 6-0 | 185 | R | R | Rookie | | Cleveland (Cleveland,TN) | |
| 49 | 1436 | June-Reg | Raul Torres | P | 18 | 6-2 | 165 | R | R | - | | | |
| 50 | 1462** | June-Reg | Rhyne Hughes | 1B | 19 | 6-2 | 175 | L | L | AAA | | Pearl River Community College | |