| 973. | Nyjer Morgan | CF | PIT | 21 | 7/2/1980 | 6-0 | 180 | L-L | MLB | 2007-2008 | Walla Walla Community College | 14 |
| 974. | Coltyn Simmons | OF | TB | 18 | 12/4/1983 | 6-0 | 190 | R-R | A+ | | Durango High School (Las Vegas,NV) | 9 |
| 978. | Cesar Carrillo | P | KC | 18 | 4/29/1984 | 6-3 | 177 | R-R | AAA | | Mount Carmel High School (Chicago,IL) | 6 |
| 979. | Jeff Housman | P | MIL | 20 | 8/4/1981 | 6-3 | 180 | L-L | AAA | | California State University, Fullerton | 193 |
| 982. | Larry Grayson | 2B | TEX | 19 | 7/28/1982 | 5-10 | 180 | R-R | AA | | Manatee Community College | 163 |
| 984. | Chris Roque | P | ANA | 19 | 10/13/1982 | 6-3 | 180 | R-R | Ind | | Broward Community College | 60 |
| 985. | John Banach | 3B | SD | 19 | 6/7/1983 | 6-1 | 200 | R-R | Ind | | Lakewood High School (Lakewood,CA) | 44 |
| 986. | Carlo Cota | 2B | TOR | 21 | 9/18/1980 | 5-10 | 180 | R-R | AAA | | San Diego State University | 151 |
| 989. | Jeremy Rogelstad | P | PHI | 23 | 11/29/1978 | 6-7 | 195 | R-R | A- | | San Jose State University | 77 |
| 991. | Eduardo Baez | P | LA | 17 | 10/19/1984 | 6-0 | 172 | R-R | - | | Francis Poly High School (Sun Valley,CA) | 11 |
| 993. | Adam Harvey | C | CHC | 18 | 7/26/1983 | 6-0 | 215 | R-R | - | | Celina High School (Celina,TX) | 1 |
| 994. | Jensen Lewis | | CLE | 18 | 5/16/1984 | 6-3 | 185 | R-R | MLB | 2007-2008 | Anderson High School (Cincinnati,OH) | 4 |
| 995. | Jacob Eckley | P | ATL | 19 | 6/27/1983 | 6-4 | 210 | L-L | Rookie | | Burke High School (Omaha,NE) | 5 |
| 1002. | Josh Bridges | C | STL | 22 | 10/21/1979 | 6-3 | 205 | R-R | A- | | Martin Methodist College (Tenn.) | 3 |