| 1 | 1 | June-Reg | Bryan Bullington | P | 21 | 6-5 | 220 | R | R | MLB | 2005-2009 | Ball State University | $4,000,000 |
| 2 | 42 | June-Reg | Blair Johnson | P | 18 | 6-4 | 200 | R | R | AA | | Washburn (Topeka,KS) | |
| 3 | 73 | June-Reg | Taber Lee | SS | 21 | 6-1 | 180 | B | R | AAA | | San Diego State University | |
| 4 | 103 | June-Reg | Wardell Starling | P | 19 | 6-4 | 190 | R | R | AA | | Elkins (Missouri City,TX) | |
| 5 | 133 | June-Reg | Alex Hart | P | 22 | 6-5 | 220 | R | R | A+ | | University of Florida | |
| 6 | 163 | June-Reg | Brad Eldred | IF | 21 | 6-5 | 245 | R | R | MLB | 2005-2007 | Florida International University | |
| 7 | 193 | June-Reg | Matt Capps | P | 18 | 6-2 | 220 | R | R | MLB | 2005-2009 | Alexander (Douglasville,GA) | |
| 8 | 223 | June-Reg | Bobby Kingsbury | OF | 21 | 6-1 | 180 | L | L | A+ | | Fordham University | |
| 9 | 253 | June-Reg | Joe Hicks | OF | 18 | 5-11 | 170 | R | R | A- | | Forest Brook (Houston,TX) | |
| 10 | 283 | June-Reg | David Davidson | P | 18 | 6-1 | 180 | L | L | MLB | 2007-2009 | Denis Morris (Thorold,ON) | |
| 11 | 313 | June-Reg | Anthony Bocchino | OF | 22 | 5-11 | 185 | L | L | A+ | | Marist College | |
| 12 | 343 | June-Reg | Brian Holliday | P | 18 | 6-2 | 185 | L | L | AA | | Moon Area (Coraopolis,PA) | |
| 13 | 373 | June-Reg | Chris Cunningham | C | 21 | 6-1 | 190 | L | R | College | | University of Arizona | |
| 14 | 403 | June-Reg | John Smith | 2B | 20 | 5-10 | 180 | L | R | A- | | Middle Georgia College | |
| 15 | 433 | June-Reg | Jonathan Schneider | P | 22 | 6-7 | 210 | R | R | A- | | Liberty University | |
| 16 | 463 | June-Reg | John Hummel | P | 18 | 6-5 | 210 | L | L | A- | | Schaumburg (Schaumburg,IL) | |
| 17 | 493 | June-Reg | Chris Demaria | P | 21 | 6-3 | 210 | R | R | MLB | 2005-2006 | Long Beach State University | |
| 18 | 523** | June-Reg | Jeff Watchko | P | 21 | 6-3 | 195 | R | R | A- | | Georgia Tech | |
| 19 | 553 | June-Reg | Herbert Andres | P | | | 0 | | | - | | WJ Mouat SS (San Clara,Can) | |
| 20 | 583 | June-Reg | Russ Bayer | P | 22 | 6-4 | 210 | L | L | A | | University of Miami | |
| 21 | 613 | June-Reg | Chris Holt | P | 23 | 6-0 | 190 | R | R | A- | | Flagler College | |
| 22 | 643 | June-Reg | Paul Harp | P | | | 0 | | | - | | Middle Georgia College | |
| 23 | 673 | June-Reg | Dean Devine | C | 22 | 6-0 | 175 | R | R | A- | | University of South Dakota | |
| 24 | 703 | June-Reg | Sam Christensen | 1B | | | 0 | | | - | | Colorado State University-Pueblo | |
| 25 | 733 | June-Reg | Matt Cundiff | P | | | 0 | | | - | | Cooper City (Cooper City,FL) | |
| 26 | 763** | June-Reg | Calvin Beamon | OF | 18 | 6-1 | 190 | L | L | A | | Smoky Hill (Aurora,CO) | |
| 27 | 793 | June-Reg | Gene Filyaw | SS | | | 0 | | | Ind | | Jasper (Jasper,TX) | |
| 28 | 823 | June-Reg | Anthony Stevens | SS | 17 | 6-0 | 180 | R | R | A- | | South Doyle (Knoxville,TN) | |
| 29 | 853 | June-Reg | Francis Poni | C | 18 | 6-0 | 200 | R | R | A | | Los Angeles Harbor College | |
| 30 | 883** | June-Reg | Chris Toneguzzi | | 19 | 6-4 | 260 | B | R | A | | Markville (Markham,ON) | |
| 31 | 913 | June-Reg | William Webster | C | | | 0 | | | - | | Moon Valley (Phoenix,AZ) | |
| 32 | 943** | June-Reg | Angel Colon | CF | 18 | 6-4 | 210 | R | R | A | | San Vicente De Paul (Toa Baja,PR) | |
| 33 | 973 | June-Reg | Nyjer Morgan | CF | 21 | 6-0 | 180 | L | L | MLB | 2007-2009 | Walla Walla Community College | |
| 34 | 1003** | June-Reg | Adam Howard | P | 18 | 6-4 | 200 | R | R | AAA | | Ooltewah (Ooltewah,TN) | |
| 35 | 1033 | June-Reg | Eric King | P | | | | | | - | | Los Medanos College | |
| 36 | 1063** | June-Reg | Ryan Aldridge | P | 18 | 6-2 | 188 | R | R | AA | | Wayne County (Jesup,GA) | |
| 37 | 1093** | June-Reg | Tony Snow | P | 18 | 6-4 | 210 | R | R | A- | | Cascade (Everett,WA) | |
| 38 | 1123 | June-Reg | Phillip Stillwell | P | 19 | 6-2 | 175 | R | R | - | | North Florida Community College | |
| 39 | 1153 | June-Reg | Chase Moore | | 18 | 6-4 | 230 | R | R | College | | St. Mary's College of California | |
| 40 | 1183 | June-Reg | Matt Maropis | | | | | | | College | | Franklin Area (Franklin,PA) | |
| 41 | 1213** | June-Reg | Rollie Gibson | P | 18 | 6-2 | 220 | R | L | A+ | | Buchanan (Clovis,CA) | |
| 42 | 1243 | June-Reg | Chaz Lytle | OF | 21 | 6-1 | 190 | L | L | AA | | University of Georgia | |
| 43 | 1273 | June-Reg | Mike Hicks | P | 24 | 6-0 | 190 | R | R | Ind | | St. Stephens (Hickory,NC) | |