| 1 | 5 | June-Reg | Clint Everts | P | 17 | 6-2 | 170 | R | R | AAA | | Cypress Falls (Houston,TX) | |
| 2 | 46 | June-Reg | Darrell Rasner | P | 21 | 6-3 | 210 | R | R | MLB | 2005-2008 | University of Nevada | |
| 3 | 77 | June-Reg | Larry Broadway | IF | 21 | 6-4 | 230 | L | L | AAA | | Duke University | |
| 4 | 107 | June-Reg | Jon Felfoldi | P | 20 | 6-1 | 180 | L | L | AA | | Glendale Community College | |
| 5 | 137 | June-Reg | Anthony Pearson | P | 20 | 6-3 | 190 | R | R | A+ | | Jackson State University | |
| 6 | 167 | June-Reg | Chad Chop | OF | 19 | 6-3 | 215 | L | L | A+ | | Vanderbilt University | |
| 7 | 197 | June-Reg | Mike O'Connor | P | 21 | 6-3 | 170 | L | L | MLB | 2006-2008 | George Washington University | |
| 8 | 227** | June-Reg | Friedel Pinkston | P | 18 | 6-3 | 200 | R | R | Ind | | Hart County (Hartwell,GA) | |
| 9 | 257 | June-Reg | Chris Barlow | P | 21 | 6-6 | 210 | R | R | A+ | | Le Moyne College | |
| 10 | 287** | June-Reg | Justin Azze | P | 19 | 6-3 | 205 | L | L | A- | | Orange County Community College | |
| 11 | 317 | June-Reg | Jay Bergmann | P | 20 | 6-4 | 185 | R | R | MLB | 2005-2009 | Rutgers University | |
| 12 | 347 | June-Reg | Daniel Rueckel | P | 22 | 6-0 | 165 | R | R | AAA | | Furman University | |
| 13 | 377 | June-Reg | Brett Nyquist | P | 21 | 6-7 | 200 | L | L | AA | | College of Saint Scholastica | |
| 14 | 407 | June-Reg | Erik Fiedler | P | 23 | 6-4 | 190 | R | R | A | | San Diego State University | |
| 15 | 437 | June-Reg | Isaiah Wright | P | 18 | 6-1 | 170 | R | R | A- | | Dover (Dover,DE) | |
| 16 | 467 | June-Reg | Brian Ellerson | IF | 22 | 6-1 | 195 | R | R | A+ | | Montclair State University | |
| 17 | 497 | June-Reg | Jason Conlisk | IF | 20 | 5-10 | 180 | B | R | A | - | Fordham University | |
| 18 | 527 | June-Reg | Tony Brown | OF | 22 | 6-1 | 190 | B | R | A | | George Washington University | |
| 19 | 557 | June-Reg | Franklyn Jimenez | 1B-OF | 20 | 6-2 | 180 | R | R | A | | Muscatine Community College | |
| 20 | 587 | June-Reg | Tim Sweeney | IF | 21 | 6-3 | 195 | R | R | A | | Rutgers University | |
| 21 | 617 | June-Reg | Stockton Davis | P | 22 | 6-3 | 210 | R | R | A+ | | Oral Roberts University | |
| 22 | 647 | June-Reg | Marcus Davis | | | | | | | College | | Luray (Luray,VA) | |
| 23 | 677 | June-Reg | Nathan Weese | IF | 22 | 6-0 | 195 | L | R | A- | | University of Utah | |
| 24 | 707 | June-Reg | Matt Swope | OF | 22 | 6-0 | 185 | R | R | A | - | University of Maryland | |
| 25 | 737 | June-Reg | Adrian Urquhart | OF | 22 | 6-1 | 190 | R | R | A- | | Alabama State University | |
| 26 | 767 | June-Reg | Maurice Cobb | OF | 18 | 6-1 | 190 | R | R | A- | | Rocky Mount (Rocky Mount,NC) | |
| 27 | 797 | June-Reg | Matt Bonovich | | 22 | | | | | College | | USC | |
| 28 | 827** | June-Reg | Tony Irvin | P | 19 | 6-5 | 230 | R | R | Rookie | | Hillsborough Community College | |
| 29 | 857 | June-Reg | Timothy Hudnall | 1B | | | 0 | | | - | | Lake Michigan College | |
| 30 | 887** | June-Reg | Robert Rohrbaugh | | 18 | 6-2 | 195 | R | L | AAA | | Littlestown (Littlestown,PA) | |
| 31 | 917** | June-Reg | Reuben Kerbs | P | 21 | 6-2 | 185 | L | L | A+ | | Wichita State University | |
| 32 | 947 | June-Reg | Cameron O'Donnell | P | | | 0 | | | - | | Middle Georgia College | |
| 33 | 977 | June-Reg | Andrew Wells | | 19 | 6-4 | 227 | L | L | College | | St. Stephen's-St. Agnes (Alexandria,VA) | |
| 34 | 1007 | June-Reg | Jack Lyons | | | | | | | College | | Maret School (Washington,DC) | |
| 35 | 1037** | June-Reg | Sean White | P | 21 | 6-4 | 200 | R | R | MLB | 2007-2009 | University of Washington | |
| 36 | 1067 | June-Reg | Jeff Miller | 1B | | | 0 | | | - | | Pine Grove Area (Pine Grove,PA) | |
| 37 | 1097 | June-Reg | Jarvis Hicks | P | | | 0 | | | - | | South Florida Community College | |
| 38 | 1127 | June-Reg | Nick Ponomarenko | | 20 | 6-2 | 195 | R | R | College | | Cuesta College | |
| 39 | 1157** | June-Reg | Jon Hunton | P | 19 | 6-9 | 230 | R | R | AA | | Miami-Dade College | |
| 40 | 1187 | June-Reg | Bryan Coffey | P | | | 0 | | | - | | Culpeper County (Culpeper,VA) | |
| 41 | 1217 | June-Reg | Michael Romeo | 3B | | | 0 | | | - | | Lindenhurst (Lindenhurst,NY) | |
| 42 | 1247** | June-Reg | Randy Dicken | P | 19 | 6-2 | 198 | R | R | A | | Allegany College of Maryland | |
| 43 | 1277** | June-Reg | Brody Taylor | P | 19 | 6-2 | 205 | R | L | Ind | | Louisburg College | |
| 44 | 1305** | June-Reg | Michael Gibbs | P | 17 | 6-5 | 195 | R | R | Ind | | Roxborough (Philadelphia,PA) | |
| 45 | 1333** | June-Reg | Jon Link | | 18 | 6-1 | 175 | R | R | AAA | | Chantilly (Chantilly,VA) | |
| 46 | 1360 | June-Reg | Marc Nunez | P | | | 0 | | | - | | Countryside (Clearwater,FL) | |
| 47 | 1386** | June-Reg | Ronald Ball | P | 18 | 6-3 | 190 | R | R | A+ | | Kennedy (La Palma,CA) | |
| 48 | 1412 | June-Reg | Ken Beck | P | 22 | 6-2 | 190 | R | R | A- | | University of Maryland | |
| 49 | 1438 | June-Reg | James Treece | P | 19 | | 0 | | | - | | Orange County Community College | |
| 50 | 1462 | June-Reg | Joe Gregory | P | | | 0 | | | - | | Western (Davie,FL) | |