| 46. | Andy Sisco | P | CHC | 18 | 1/13/1983 | 6-9 | 250 | L-L | MLB | 2005-2007 | Eastlake High School (Sammamish,WA) | 6 |
| 49. | Rene Rivera | C | SEA | 17 | 7/31/1983 | 5-10 | 190 | R-R | MLB | 2004-2006 | Papa Juan XXIII High School (Bayamon,PR) | |
| 50. | Donald Levinski | P | MTL | 18 | 10/20/1982 | 6-4 | 205 | R-R | A+ | | Weimar High School (Weimar,TX) | 2 |
| 51. | Jake Dittler | P | CLE | 18 | 11/24/1982 | 6-4 | 220 | R-R | AAA | | Green Valley High School (Henderson,NV) | 20 |
| 52. | J.P. Howell | P | ATL | 18 | 4/25/1983 | 6-0 | 180 | L-L | MLB | 2005-2008 | Jesuit High School (Carmichael,CA) | 7 |
| 53. | Roscoe Crosby | OF | KC | 18 | 2/6/1983 | 6-2 | 205 | L-R | - | | Union High School (Union,SC) | 3 |
| 54. | Mike Rodriguez | OF | HOU | 20 | 10/15/1980 | 5-10 | 162 | L-L | AAA | | University of Miami (Florida) | 162 |
| 56. | J.J. Hardy | IF | MIL | 18 | 8/19/1982 | 6-2 | 205 | R-R | MLB | 2005-2008 | Sabino High School (Tucson,AZ) | 5 |
| 59. | Brandon League | P | TOR | 18 | 3/16/1983 | 6-2 | 180 | R-R | MLB | 2004-2008 | St. Louis High School (Honolulu,HI) | 5 |
| 60. | Garrett Berger | P | FLA | 18 | 5/11/1983 | 6-3 | 240 | R-R | Ind | | Carmel High School (Carmel,IN) | 3 |
| 61. | Matt Chico | P | BOS | 18 | 6/10/1983 | 5-11 | 190 | L-L | MLB | 2007-2008 | Fallbrook High School (Fallbrook,CA) | 4 |
| 63. | Jason Arnold | P | NYY | 22 | 5/2/1979 | 6-3 | 210 | R-R | AAA | | University of Central Florida | 54 |
| 65. | Matt Coenen | P | DET | 21 | 3/13/1980 | 6-6 | 230 | L-L | AA | | Charleston Southern University | 1 |
| 69. | Neal Cotts | P | OAK | 21 | 3/25/1980 | 6-2 | 200 | L-L | MLB | 2003-2008 | Illinois State University | 39 |
| 70. | Alhaji Turay | OF | NYM | 18 | 9/22/1982 | 6-0 | 200 | R-R | AA | | Auburn High School (Auburn,WA) | 1 |
| 71. | Ryan Wing | P | CHW | 19 | 2/1/1982 | 6-2 | 170 | L-L | AAA | | Riverside Community College | 68 |
| 73. | Cole Barthel | 3B-OF | ATL | 18 | 8/11/1982 | 6-2 | 200 | R-R | A | | Decatur High School (Decatur,AL) | 1 |
| 74. | Jesse Foppert | P | SF | 20 | 7/10/1980 | 6-6 | 210 | R-R | MLB | 2003-2005 | University of San Francisco | 46 |
| 76. | Corey Ragsdale | SS | NYM | 18 | 11/10/1982 | 6-4 | 170 | R-R | AAA | | Nettleton High School (Jonesboro,AR) | 2 |