| 1 | 21 | June-Reg | Brad Hennessey | P | 21 | 6-2 | 185 | R | R | MLB | 2004-2008 | Youngstown State University | $1,382,500 |
| 1 | 30 | June-Reg | Noah Lowry | P | 20 | 6-2 | 190 | R | L | MLB | 2003-2007 | Pepperdine University | $1,200,000 |
| 1 | 41 | June-Reg | Todd Linden | OF | 21 | 6-2 | 215 | B | R | MLB | 2003-2007 | Louisiana State University | $915,000 |
| 2 | 74 | June-Reg | Jesse Foppert | P | 20 | 6-6 | 210 | R | R | MLB | 2003-2005 | University of San Francisco | $500,000 |
| 3 | 106 | June-Reg | Julian Benavidez | IF | 19 | 6-2 | 200 | R | R | AA | - | Diablo Valley College | $325,000 |
| 4 | 136 | June-Reg | Josh Cram | P | 20 | 6-2 | 200 | R | R | A+ | | Clemson University | $207,000 |
| 5 | 166 | June-Reg | Justin Knoedler | P | 20 | 6-2 | 205 | R | R | MLB | 2004-2006 | Miami University | $152,000 |
| 6 | 196 | June-Reg | David Cash | P | 21 | 6-1 | 180 | R | R | AAA | | University of California | $42,500 |
| 7 | 226 | June-Reg | Jamie Athas | IF | 21 | 6-2 | 190 | L | R | AAA | | Wake Forest University | $100,000 |
| 8 | 256 | June-Reg | Jason Waddell | P | 20 | 6-2 | 170 | R | L | MLB | 2009-2009 | Riverside Community College | $85,000 |
| 9 | 286** | June-Reg | T.J. Large | P | 18 | 6-4 | 185 | R | R | AAA | | Seminole (Seminole,FL) | |
| 10 | 316 | June-Reg | Wes Hutchison | P | 22 | 6-1 | 195 | R | R | AAA | | Lewis-Clark State College | $2,500 |
| 11 | 346 | June-Reg | Derin McMains | IF | 21 | 6-0 | 180 | B | R | AAA | | University of Arkansas-Little Rock | |
| 12 | 376 | June-Reg | Albert Montes | P | 21 | 6-2 | 210 | R | R | AA | | University of Texas | |
| 13 | 406 | June-Reg | Juan Serrato | P | 19 | 6-2 | 175 | R | R | A+ | | Riverside Community College | |
| 14 | 436** | June-Reg | Jeffrey Timmons | C | 18 | 6-1 | 195 | R | R | A- | | Nova (Davie,FL) | |
| 15 | 466 | June-Reg | Tyler Von Schell | IF | 21 | 6-3 | 215 | R | R | AAA | | University of California-Santa Barbara | |
| 16 | 496 | June-Reg | Craig James | P | 18 | 6-1 | 170 | R | R | AA | | Killian (Miami,FL) | |
| 17 | 526 | June-Reg | Steve Holm | C | 21 | 6-0 | 195 | R | R | MLB | 2008-2009 | Oral Roberts University | |
| 18 | 556 | June-Reg | Dayton Buller | C | 20 | 6-0 | 190 | R | R | AAA | | Freed-Hardeman University | |
| 19 | 586 | June-Reg | Robbie Meyer | OF | 22 | 6-2 | 195 | R | R | A | | University of California | |
| 20 | 616** | June-Reg | Richard Giannotti | OF | 17 | 6-3 | 180 | R | R | A | | St. Thomas Aquinas (Fort Lauderdale,FL) | |
| 21 | 646 | June-Reg | Miguel Miranda | IF | 22 | 6-0 | 175 | B | R | A | | University of Arkansas | |
| 22 | 676 | June-Reg | Karl Jernigan | OF | 22 | 6-2 | 195 | R | R | A | | Florida State University | |
| 23 | 706 | June-Reg | Petersen Benjamin | P | 22 | 6-4 | 210 | R | R | A | | Florida Atlantic University | |
| 24 | 736 | June-Reg | Peter Healey | P | | | 0 | | | - | | | |
| 25 | 766 | June-Reg | Ryan Meaux | P | 22 | 5-11 | 170 | B | L | AAA | | Lamar Community College | |
| 26 | 796** | June-Reg | Bobby Wilson | C | 18 | 6-0 | 205 | R | R | MLB | 2008-2009 | Seminole (Seminole,FL) | |
| 27 | 826 | June-Reg | Keith Anderson | C | 22 | 6-1 | 205 | R | R | AAA | | Cal Poly | |
| 28 | 856 | June-Reg | David Hixson | P | 22 | 6-1 | 195 | R | R | A | | Gonzaga University | |
| 29 | 886 | June-Reg | Matt Huntingford | OF | 22 | 6-1 | 170 | L | L | A | | Florida International University | |
| 30 | 916 | June-Reg | Joe Mercer | | | | | | | Ind | | American River College | |
| 31 | 946 | June-Reg | Chris Ciesluk | 3B | 18 | 6-2 | 210 | R | R | A+ | | Taunton (Taunton,MA) | |
| 32 | 976 | June-Reg | Brian Stirm | P | 19 | 6-6 | 200 | R | R | A+ | | West Valley College | |
| 33 | 1006 | June-Reg | R.D. Spiehs | P | 21 | 6-3 | 210 | R | R | AAA | | University of Nebraska | |
| 34 | 1036 | June-Reg | Aaron Hornostaj | IF-OF | 18 | 6-1 | 180 | L | R | AAA | | St. Thomas of Villanova (LaSalle,ON) | |
| 35 | 1066** | June-Reg | Chris Hamblen | C | 21 | 6-1 | 190 | B | R | A+ | | University of Cincinnati | |
| 36 | 1096** | June-Reg | Matt Hopper | 1B | 21 | 6-4 | 210 | R | R | A | | University of Nebraska | |
| 37 | 1126 | June-Reg | Todd Mittauer | | | | | | | College | | Dade Christian School (Miami,FL) | |
| 38 | 1156 | June-Reg | Lamont Jordan | 2B | | 6-0 | 175 | R | R | - | | Dinwiddie County (Dinwiddie,VA) | |
| 39 | 1186** | June-Reg | Matthew Somnis | P | | | 0 | | | - | | Tumwater (Tumwater,WA) | |
| 40 | 1215 | June-Reg | Ruddy Garcia | P | 17 | 6-2 | 170 | R | R | Rookie | | Lake Worth (Lake Worth,FL) | |
| 41 | 1244 | June-Reg | Austin Allen | SS | 19 | 5-9 | 175 | R | R | - | | Mount Hood Community College | |
| 42 | 1272** | June-Reg | P.J. Hiser | P | 19 | 6-1 | 195 | R | R | A | | Hagerstown Community College | |
| 43 | 1300** | June-Reg | Kevin Bulger | SS | 18 | 6-4 | 195 | R | R | Rookie | | Brookwood (Snellville,GA) | $0 |
| 44 | 1328 | June-Reg | Jon Williams | C | 22 | 5-10 | 190 | L | R | AA | | University of Missouri | |
| 45 | 1356** | June-Reg | Karl Amonite | | 19 | 6-5 | 235 | L | R | College | | Connors State College | |
| 46 | 1384 | June-Reg | Mike Adcock | P | 18 | 6-1 | 180 | R | R | - | | Lebanon (Lebanon,TN) | |
| 47 | 1411 | June-Reg | Scott Munter | P | 21 | 6-6 | 235 | R | R | MLB | 2005-2007 | Butler Community College | |
| 48 | 1437** | June-Reg | Paul O'Toole | C | 21 | 6-1 | 220 | L | R | AA | | University of Notre Dame | |
| 49 | 1462** | June-Reg | Brian Bulger | P | 20 | 6-4 | 200 | R | R | A | | South Georgia College | $0 |
| 50 | 1485 | June-Reg | P.J. Mcginnis | | 20 | 5-11 | 180 | R | R | College | | University of Central Missouri | |