| 1 | 13 | June-Reg | Casey Kotchman | IF | 18 | 6-3 | 210 | L | L | MLB | 2004-2009 | Seminole Community College | $1,500,000 |
| 1 | 33 | June-Reg | Jeff Mathis | C | 18 | 6-0 | 180 | R | R | MLB | 2005-2009 | Marianna (Marianna,FL) | $1,125,000 |
| 2 | 57 | June-Reg | Dallas McPherson | IF | 20 | 6-4 | 210 | L | R | MLB | 2004-2008 | The Citadel | $1,000,000 |
| 3 | 81 | June-Reg | Steven Shell | P | 18 | 6-5 | 195 | R | R | MLB | 2008-2009 | El Reno (El Reno,OK) | $345,000 |
| 3 | 89 | June-Reg | Jake Woods | P | 19 | 6-1 | 195 | L | L | MLB | 2005-2008 | Bakersfield College | $450,000 |
| 4 | 119 | June-Reg | Mike Nickoli | P | 21 | 6-5 | 200 | R | R | AA | | Birmingham-Southern College | $275,000 |
| 5 | 149 | June-Reg | Brad Pinkerton | P | 21 | 6-2 | 192 | L | L | Rookie | | Elon University | $175,000 |
| 6 | 179 | June-Reg | Quan Cosby | OF | 18 | 5-10 | 180 | B | R | A | | Mart (Mart,TX) | $825,000 |
| 7 | 209** | June-Reg | Rich Hill | P | 21 | 6-4 | 180 | L | L | MLB | 2005-2009 | University of Texas-San Antonio | $0 |
| 8 | 239 | June-Reg | Justin Turner | IF | 21 | 6-1 | 195 | L | R | AA | | Warner Southern College | $70,000 |
| 9 | 269** | June-Reg | Devin Ivany | C | 18 | 6-1 | 178 | R | R | AA | | Cardinal Gibbons (Fort Lauderdale,FL) | |
| 10 | 299 | June-Reg | Matt Brown | 3B | 18 | 6-0 | 180 | R | R | MLB | 2007-2008 | Coeur D'Alene (Coeur D'Alene,ID) | $48,500 |
| 11 | 329 | June-Reg | Jonathan Shull | P | 19 | 6-3 | 200 | R | R | Rookie | | Eastside (Eastside,IN) | |
| 12 | 359 | June-Reg | Ryan Budde | C | 21 | 5-11 | 190 | R | R | MLB | 2007-2009 | Oklahoma State University | |
| 13 | 389 | June-Reg | Tony Arthur | P | 22 | 6-1 | 215 | L | L | A | | Arkansas State University | |
| 14 | 419 | June-Reg | Jason Dennis | P | 22 | 6-0 | 195 | L | L | A+ | | University of California | |
| 15 | 449 | June-Reg | Micah Posey | P | 18 | 6-5 | 220 | L | L | A+ | | North Florida Christian (Tallahassee,FL) | |
| 16 | 479 | June-Reg | Al Corbeil | C | 22 | 6-0 | 190 | L | R | A+ | | Florida Southern College | |
| 17 | 509** | June-Reg | Michael Gallaway | P | | | 0 | | | - | | Allen (Allen,TX) | |
| 18 | 539 | June-Reg | Edward Tolzien | 1B | 21 | 6-4 | 207 | L | L | A | | Illinois State University | |
| 19 | 569 | June-Reg | Nick Gorneault | OF | 22 | 6-3 | 200 | R | R | MLB | 2007-2007 | University of Massachusetts | |
| 20 | 599 | June-Reg | Justin Nelson | OF | 18 | 6-3 | 205 | L | L | AA | | Rancho Buena Vista (Vista,CA) | |
| 21 | 629 | June-Reg | David Gates | RF | 20 | 6-1 | 200 | R | R | AA | | University of Alabama-Huntsville | |
| 22 | 659** | June-Reg | Brock Keffer | P | | | 0 | | | - | | La Salle-Peru Township (Peru,IL) | |
| 23 | 689 | June-Reg | Mitchell Arnold | P | 19 | 6-9 | 230 | R | R | AAA | | New Mexico Junior College | |
| 24 | 719 | June-Reg | William Robbins | P | | | 0 | | | - | | Lockhart (Lockhart,SC) | |
| 25 | 749 | June-Reg | Mark O'Sullivan | P | 22 | 6-2 | 200 | R | R | AA | | Rollins College | |
| 26 | 779 | June-Reg | Jason Durbin | OF | 18 | 5-11 | 185 | R | R | College | | | |
| 27 | 809 | June-Reg | Kelly Sisco | P | 19 | 6-4 | 190 | L | L | Rookie | | Connors State College | |
| 28 | 839 | June-Reg | Ryan Nevins | OF | 22 | 5-9 | 170 | L | R | A | | New York Institute of Technology | |
| 29 | 869** | June-Reg | Carlos Corporan | 1B | 17 | 6-3 | 210 | B | R | MLB | 2009-2009 | Francisco Oller Catano (PR) | |
| 30 | 899 | June-Reg | Kris Sutton | P | 22 | 6-2 | 205 | R | R | Ind | | University of Tampa | |
| 31 | 929 | June-Reg | Ryan Bailey | P | 21 | 6-2 | 210 | R | R | Rookie | | University of Utah | |
| 32 | 959 | June-Reg | Steve Andrade | P | 23 | 6-1 | 200 | R | R | MLB | 2006-2006 | Cal State Stanislaus | |
| 33 | 989** | June-Reg | Scott Lewis | | 17 | 6-0 | 185 | L | L | MLB | 2008-2009 | Washington Court House (Washington Court House,OH) | |
| 34 | 1019 | June-Reg | Casey Smith | 2B | 22 | 6-2 | 200 | R | R | AAA | - | Troy University | |
| 35 | 1049 | June-Reg | Blake Allen | | 21 | 6-4 | 190 | B | R | Rookie | | University of Alabama-Birmingham | |
| 36 | 1079 | June-Reg | Steve Trosclair | | | | | | | College | | Southeastern Louisiana University | |
| 37 | 1109** | June-Reg | James Morris | | 18 | 6-8 | 255 | L | L | Rookie | | Eldorado (Eldorado,IL) | |
| 38 | 1139** | June-Reg | Tom Sgueglia | 3B | 17 | 6-2 | 205 | R | R | Rookie | | Mount St. Michael Academy (Bronx,NY) | |
| 39 | 1169 | June-Reg | Jaime Steward | P | 22 | 6-0 | 180 | L | L | A | | Le Moyne College | |
| 40 | 1199 | June-Reg | Blake Crigger | P | 19 | 6-2 | 211 | R | R | College | | Northwest Florida State College | |
| 41 | 1228 | June-Reg | Brent Del Chiaro | C | 22 | 6-3 | 217 | R | R | AAA | | University of Kansas | |
| 42 | 1257 | June-Reg | Ryan Webb | OF | 23 | 6-3 | 190 | R | R | A+ | | Long Beach State University | |
| 43 | 1285 | June-Reg | David Bartelt | | 18 | 6-2 | 190 | R | R | College | | Jesuit (Tampa,FL) | |
| 44 | 1313 | June-Reg | Mike Eylward | IF | 21 | 6-2 | 210 | R | R | AAA | | University of South Florida | |
| 45 | 1341 | June-Reg | Greg Porter | OF | 20 | 6-4 | 220 | L | R | AAA | | Texas A&M University | |
| 46 | 1369 | June-Reg | Alberto Marrero | C | 17 | 6-1 | 170 | R | R | - | - | Luis Pales Matos (Santa Rosa,PR) | |
| 47 | 1396 | June-Reg | Jorge Marrero | CF | 18 | 5-11 | 145 | R | R | - | - | Jose Collazo Colon (Juncos,PR) | |
| 48 | 1423** | June-Reg | Collin Mahoney | C | 18 | 6-3 | 235 | R | R | A | | Mount St. Michael Academy (Bronx,NY) | |
| 49 | 1448 | June-Reg | Steve Nielsen | P | | 6-6 | 200 | R | R | Ind | | Triton College | |
| 50 | 1471 | June-Reg | Kevin Letz | | 18 | 6-2 | 165 | R | R | College | | Hanks (El Paso,TX) | |