| 1. | Adrian Gonzalez | 1B | FLA | 18 | 5/8/1982 | 6-2 | 190 | L-L | MLB | 2004-2008 | Eastlake High School (Chula Vista,CA) | 1 |
| 2. | Adam Johnson | P | MIN | 20 | 7/12/1979 | 6-2 | 210 | R-R | MLB | 2001-2003 | California State University, Fullerton | 175 |
| 3. | Luis Montanez | IF | CHC | 18 | 12/15/1981 | 6-2 | 185 | R-R | AAA | | Coral Park High School (Miami,FL) | 13 |
| 4. | Mike Stodolka | P | KC | 18 | 9/24/1981 | 6-2 | 205 | L-L | AAA | | Centennial High School (Corona,CA) | 1 |
| 6. | Rocco Baldelli | OF | TB | 18 | 9/25/1981 | 6-4 | 183 | R-R | MLB | 2003-2007 | Bishop Hendricken High School (Warwick,RI) | 3 |
| 9. | Mark Phillips | P | SD | 18 | 12/30/1981 | 6-3 | 215 | L-L | A+ | | Hanover High School (Hanover,PA) | 1 |
| 10. | Joe Torres | P | ANA | 17 | 9/3/1982 | 6-2 | 175 | L-L | AA | | Gateway High School (Kissimmee,FL) | 2 |
| 11. | Dave Krynzel | OF | MIL | 18 | 11/7/1981 | 6-1 | 180 | L-L | MLB | 2004-2005 | Green Valley High School (Henderson,NV) | 17 |
| 13. | Shaun Boyd | IF | STL | 18 | 8/15/1981 | 5-10 | 175 | R-R | AAA | - | Vista High School (Vista,CA) | 7 |
| 16. | Billy Traber | P | NYM | 20 | 9/18/1979 | 6-5 | 205 | L-L | MLB | 2003-2008 | Loyola Marymount University | 64 |
| 18. | Miguel Negron | OF | TOR | 17 | 8/22/1982 | 6-2 | 170 | L-L | AAA | | Manuela Toro High School (Caguas, PR ) | |
| 19. | Sean Burnett | P | PIT | 17 | 9/17/1982 | 6-1 | 176 | L-L | MLB | 2004-2008 | Wellington Christian High School (Wellington,FL) | 10 |
| 21. | Boof Bonser | P | SF | 18 | 10/14/1981 | 6-4 | 230 | R-R | MLB | 2006-2008 | Gibbs High School (St. Petersburg,FL) | 5 |
| 22. | Phillip Dumatrait | P | BOS | 18 | 7/12/1981 | 6-2 | 170 | R-L | MLB | 2007-2008 | Bakersfield Junior College | 57 |
| 24. | Blake Williams | P | STL | 21 | 2/22/1979 | 6-5 | 225 | R-R | A+ | | Southwest Texas State University | 16 |
| 26. | Corey Smith | IF | CLE | 18 | 4/15/1982 | 6-1 | 205 | R-R | AAA | | Piscataway High School (Piscataway,NJ) | 7 |
| 29. | Adam Wainwright | P | ATL | 18 | 8/30/1981 | 6-6 | 190 | R-R | MLB | 2005-2008 | Glynn Academy High School (Brunswick,GA) | 4 |
| 30. | Scott Thorman | IF | ATL | 18 | 1/6/1982 | 6-3 | 205 | L-R | MLB | 2006-2007 | Preston High School (Cambridge,ON) | 1 |
| 32. | Tripper Johnson | 3B | BAL | 18 | 4/28/1982 | 6-1 | 200 | R-R | AA | | Newport High School (Bellevue,WA) | 12 |
| 33. | Dustin McGowan | P | TOR | 18 | 3/24/1982 | 6-3 | 190 | R-R | MLB | 2005-2008 | Long County High School (Ludowici,GA) | 1 |
| 34. | Dustin Moseley | P | CIN | 18 | 12/26/1981 | 6-3 | 190 | R-R | MLB | 2006-2008 | Arkansas High School (Texarkana,AR) | 6 |
| 35. | Tyrell Godwin | CF | TEX | 20 | 7/10/1979 | 6-0 | 200 | L-R | MLB | 2005-2005 | University of North Carolina | 104 |
| 36. | Bob Keppel | P | NYM | 18 | 6/11/1982 | 6-5 | 200 | R-R | MLB | 2006-2007 | De Smet Jesuit High School (Creve Coeur,MO) | 3 |
| 37. | Derek Thompson | P | CLE | 19 | 1/8/1981 | 6-2 | 180 | L-L | MLB | 2005-2005 | Land O'Lakes High School (Land O'Lakes,FL) | 5 |
| 38. | Kelly Johnson | P | ATL | 18 | 2/22/1982 | 6-1 | 180 | L-R | MLB | 2005-2008 | Westwood High School (Austin,TX) | 10 |
| 40. | Aaron Herr | IF | ATL | 19 | 3/7/1981 | 5-11 | 183 | R-R | AAA | | Hempfield High School (Landisville,PA) | 2 |