| 1 | 26 | June-Reg | Corey Smith | IF | 18 | 6-1 | 205 | R | R | AAA | | Piscataway (Piscataway,NJ) | $1,375,000 |
| 1 | 37 | June-Reg | Derek Thompson | P | 19 | 6-2 | 180 | L | L | MLB | 2005-2005 | Land O'Lakes (Land O'Lakes,FL) | $850,000 |
| 2 | 55 | June-Reg | Brian Tallet | P | 22 | 6-7 | 210 | L | L | MLB | 2002-2009 | Louisiana State University | $595,000 |
| 2 | 66 | June-Reg | Mark Folsom | RF | 19 | 6-5 | 215 | R | R | A | | West Orange (Winter Garden,FL) | $700,000 |
| 3 | 96 | June-Reg | Sean Swedlow | 1B | 18 | 6-3 | 220 | L | R | A | | San Dimas (San Dimas,CA) | $450,000 |
| 4 | 126 | June-Reg | Adam Cox | P | 20 | 6-4 | 165 | L | L | A+ | | Darton College | $216,000 |
| 5 | 156 | June-Reg | Rashad Eldridge | OF | 18 | 6-1 | 185 | B | R | AAA | | First Presbyterian Day School (Macon,GA) | $281,000 |
| 6 | 186 | June-Reg | Kyle Evans | P | 21 | 6-3 | 190 | R | R | AAA | | Baylor University | $130,000 |
| 7 | 216 | June-Reg | Victor Kleine | P | 20 | 6-4 | 185 | L | L | AAA | | John A. Logan College | $90,000 |
| 8 | 246 | June-Reg | Joe Inglett | IF | 22 | 5-10 | 175 | L | R | MLB | 2006-2009 | University of Nevada | $20,000 |
| 9 | 276** | June-Reg | Gary Tolbert | P | | | 0 | | | - | | Madison County (Danielsville,GA) | |
| 10 | 306 | June-Reg | Tom Canale | P | 20 | 6-3 | 185 | R | R | A | | California Lutheran University | $43,000 |
| 11 | 336 | June-Reg | Scott Threinen | 3B | 18 | 6-0 | 190 | R | R | A- | | Kasson-Mantorville (Mantorville,MN) | |
| 12 | 366** | June-Reg | Jason Colson | P | 21 | 6-2 | 220 | L | R | A+ | | Winthrop University | |
| 13 | 396 | June-Reg | Jeff Haase | C | 22 | 6-2 | 205 | R | R | A+ | | Cleveland State University | |
| 14 | 426 | June-Reg | Ryan Church | OF | 21 | 6-1 | 190 | L | L | MLB | 2004-2009 | University of Nevada | |
| 15 | 456 | June-Reg | Nate Janowicz | OF | 22 | 5-10 | 185 | L | L | A+ | | University of South Carolina | |
| 16 | 486 | June-Reg | Luke Field | P | 21 | 5-11 | 170 | R | R | AA | | Arizona State University | |
| 17 | 516 | June-Reg | Brandon Matheny | P | 21 | 6-3 | 205 | L | L | AAA | | Emory and Henry College | |
| 18 | 546** | June-Reg | Jeremy Rogelstad | P | 21 | 6-7 | 195 | R | R | A- | | San Jose State University | |
| 19 | 576 | June-Reg | Chad Cislak | P | | | | | | Rookie | | UCLA | |
| 20 | 606 | June-Reg | Ryan Larson | P | 21 | 5-10 | 190 | R | R | AAA | | Sacramento City College | |
| 21 | 636 | June-Reg | Steven Fugarino | P | 22 | 6-0 | 200 | R | R | A- | | Iona College | |
| 22 | 666 | June-Reg | Vince Pietro | 3B | 22 | 5-11 | 190 | R | R | A- | | Creighton University | |
| 23 | 696** | June-Reg | Brandon Harmsen | P | 18 | 6-3 | 200 | R | R | A+ | | Jenison (Jenison,MI) | |
| 24 | 726 | June-Reg | Christopher Houser | 3B | | | 0 | | | Ind | | University of Texas | |
| 25 | 756 | June-Reg | Andy Helmer | | | | | | | College | | Purdue University | |
| 26 | 786** | June-Reg | Rodney Choy Foo | ss | 18 | 6-1 | 180 | B | R | AA | | Kailua (Kailua,HI) | |
| 27 | 816 | June-Reg | Johri Litman | P | 20 | 6-3 | 205 | R | R | A- | | Yavapai College | |
| 28 | 846 | June-Reg | Jeff Opalewski | | | | | | | College | | Heritage (Saginaw,MI) | |
| 29 | 876 | June-Reg | Jon Van Every | OF | 20 | 6-1 | 185 | L | L | MLB | 2008-2009 | Itawamba Community College | |
| 30 | 906** | June-Reg | Brian Wilson | P | 18 | 6-1 | 205 | R | R | MLB | 2006-2009 | Londonderry (Londonderry,NH) | |
| 31 | 936** | June-Reg | Conor Jackson | 1B | 18 | 6-3 | 210 | R | R | MLB | 2005-2009 | El Camino Real (Woodland Hills,CA) | |
| 32 | 966** | June-Reg | Scott Thomas | C | 15 | 5-11 | 202 | L | R | AA | | Lake Michigan College | |
| 33 | 996 | June-Reg | Ashley Dunlap | | | | | | | College | | Palomar College | |
| 34 | 1026 | June-Reg | Steve Fitch | P | 22 | 6-1 | 180 | R | R | AA | | Kutztown University | |
| 35 | 1056 | June-Reg | Willie Mckenzie | | | | | | | College | | Walters State Community College | |
| 36 | 1086 | June-Reg | Jonathan Schultz | P | | | 0 | | | - | | Appleton East (Appleton,WI) | |
| 37 | 1116 | June-Reg | Damon Katz | 2B | 22 | 5-11 | 180 | R | R | A+ | | Pepperdine University | |
| 38 | 1146 | June-Reg | Robert Sierer | P | | | 0 | | | - | | Bluffton College | |
| 39 | 1176** | June-Reg | Curtis Ledbetter | | 18 | 6-3 | 220 | R | R | A+ | | Lawrence (Lawrence,KS) | |
| 40 | 1205 | June-Reg | Jon Hooker | | 21 | 6-4 | 220 | R | R | Ind | | University of Kentucky | |
| 41 | 1234 | June-Reg | Eric Crozier | IF | 21 | 6-4 | 200 | L | L | MLB | 2004-2004 | Norfolk State University | |
| 42 | 1263** | June-Reg | Silas Ah Sui | 3b | | | 0 | | | - | | College of The Siskiyous | |
| 43 | 1291 | June-Reg | Ron Colvard | | 22 | 6-4 | 200 | R | R | A- | | The Citadel | |
| 44 | 1318** | June-Reg | Joe Little | P | 18 | 6-1 | 175 | L | L | A+ | | Arvada (Arvada,CO) | |
| 45 | 1344 | June-Reg | Mark Carroll | | 18 | 6-2 | 170 | R | R | A+ | | Arcadia (Arcadia,CA) | |
| 46 | 1368 | June-Reg | Chris Appuhn | | | | | | | College | | Millard North (Omaha,NE) | |