| 1 | 12 | June-Reg | Joe Borchard | OF | 21 | 6-5 | 220 | B | R | MLB | 2002-2007 | Stanford University | $5,300,000 |
| 2 | 52 | June-Reg | Tim Hummel | 2B | 21 | 6-2 | 195 | R | R | MLB | 2003-2004 | Old Dominion University | $645,000 |
| 3 | 82 | June-Reg | Mike Morse | IF | 18 | 6-5 | 195 | R | R | MLB | 2005-2009 | Nova (Davie,FL) | $365,000 |
| 4 | 112 | June-Reg | Alvin Jones | P | 18 | 6-4 | 210 | R | R | Rookie | | Seguin (Seguin,TX) | $250,000 |
| 5 | 142** | June-Reg | Tony Richie | C | 18 | 6-1 | 215 | R | R | AAA | | Bishop Kenny (Jacksonville,FL) | $0 |
| 6 | 172 | June-Reg | Bjorn Ivy | OF | 18 | 5-10 | 170 | R | R | A | | Shannon (Shannon,MS) | $125,000 |
| 7 | 202 | June-Reg | Eddie Young | OF | 18 | 6-2 | 192 | R | R | A | | Jones County (Gray,GA) | $120,000 |
| 8 | 232 | June-Reg | Chris Amador | 2B | 17 | 5-10 | 160 | R | R | AA | | Luis Felipe Crespo (Camuy,PR) | $115,000 |
| 9 | 262 | June-Reg | Jason Aspito | OF | 21 | 6-0 | 200 | L | R | AAA | | Loyola Marymount University | $65,000 |
| 10 | 292** | June-Reg | Heath Phillips | P | 18 | 6-3 | 205 | L | L | MLB | 2007-2007 | Evansville Central (Evansville,IN) | |
| 11 | 322 | June-Reg | Tommy Nicholson | 2B | 20 | 5-9 | 160 | L | R | AAA | | University of Texas | |
| 12 | 352 | June-Reg | Mike Spidale | OF | 18 | 6-1 | 190 | R | R | AAA | | Nazareth Academy (LaGrange Park,IL) | |
| 13 | 382 | June-Reg | Derek Wigginton | OF | 21 | 6-1 | 215 | L | L | A | - | University of Alabama | |
| 14 | 412 | June-Reg | Jim Sweeney | C | 20 | 6-2 | 200 | R | L | A | | College of the Holy Cross | |
| 15 | 442 | June-Reg | John Lackaff | 3B | 21 | 5-11 | 195 | R | R | A+ | | Miami University | |
| 16 | 472 | June-Reg | Brian Graham | P | 22 | 6-0 | 190 | R | R | A+ | | University of Portland | |
| 17 | 502 | June-Reg | Ryan Liermann | 3B | | | | | | College | | Downers Grove South (Downers Grove,IL) | |
| 18 | 532 | June-Reg | Curtis Young | P | 20 | 6-2 | 170 | R | R | A | | Lamar Community College | |
| 19 | 562 | June-Reg | Scott Perhla | P | | | 0 | | | - | | Southridge (Miami,FL) | |
| 20 | 592 | June-Reg | Etienne Ratte-Delorme | P | | | 0 | | | - | | Edouard Montpetit (Montreal,QC) | |
| 21 | 622 | June-Reg | Joe Solis | P | | | 0 | | | - | | Columbus (Miami,FL) | |
| 22 | 652** | June-Reg | Gerron McGary | P | 18 | 5-11 | 180 | L | L | Rookie | | Nashville (Nashville,AZ) | |
| 23 | 682 | June-Reg | Rylan Reed | P | 18 | 6-7 | 260 | R | R | Rookie | | Crossett (Crossett,AR) | |
| 24 | 712 | June-Reg | Kyle Boyer | OF | 18 | 6-1 | 199 | R | R | A+ | | Temecula Valley (Temecula,CA) | |
| 25 | 742** | June-Reg | Travis NeSmith | P | 18 | 6-3 | 225 | L | L | A- | | Gulliver Prep (Coral Gables,FL) | |
| 26 | 772 | June-Reg | Victor Martinez | | | | | | | College | | Goleman (Miami,FL) | |
| 27 | 802 | June-Reg | Brad Murray | P | 21 | 5-11 | 175 | L | L | AA | | Embry-Riddle University | |
| 28 | 832 | June-Reg | Brad Bohannan | P | 22 | 6-3 | 170 | R | R | AA | | University of Arkansas | |
| 29 | 862 | June-Reg | Anthony Monegan | OF | 21 | 6-1 | 170 | L | R | A+ | | Kishwaukee College | |
| 30 | 892 | June-Reg | Brian Keating | | 19 | 6-3 | 190 | R | L | Ind | | Lewis and Clark Community College | |
| 31 | 922 | June-Reg | Darren Ciraco | OF | 19 | 6-2 | 200 | R | R | A+ | | Briarcliffe College | |
| 32 | 952 | June-Reg | Brandon Bounds | 1B | 18 | 6-6 | 190 | L | R | A | | Mansfield (Arlington,TX) | |
| 33 | 982 | June-Reg | Jeff Lundgren | C | | | 0 | | | - | | Chaparral (Scottsdale,AZ) | |
| 34 | 1012 | June-Reg | Richard Spivey | P | | | 0 | | | - | | Glen Este (Cincinnati,OH) | |
| 35 | 1042 | June-Reg | Michael Oehlberg | P | | | 0 | | | College | | Kishwaukee College | |
| 36 | 1072 | June-Reg | Armando Perez | P | 19 | 6-2 | 190 | L | L | Rookie | | Southwestern Junior College | |
| 37 | 1102 | June-Reg | Matt Maley | OF-IF | 17 | 6-1 | 178 | L | R | College | | Killian (Miami,FL) | |
| 38 | 1132** | June-Reg | Tom Gorzelanny | P | 17 | 6-3 | 200 | B | L | MLB | 2005-2009 | Marist (Chicago,IL) | |
| 39 | 1162 | June-Reg | Tyrel Davis | 3B-OF | 19 | 5-10 | 185 | R | R | Rookie | | Columbia Basin College | |
| 40 | 1192 | June-Reg | Jarod Tate | P | | | 0 | | | - | | Lumberton (Lumberton,TX) | |
| 41 | 1221** | June-Reg | Brian Barr | P | 18 | 6-4 | 216 | R | R | Ind | | Arkansas (Texarkana,AR) | |
| 42 | 1250** | June-Reg | Fernando Alvarez | | 19 | 6-0 | 209 | L | L | Rookie | | Dodge City Community College | |
| 43 | 1279** | June-Reg | Brian Schweiger | C | 17 | 6-0 | 200 | R | R | AAA | | Fontana (Fontana,CA) | |
| 44 | 1306 | June-Reg | Dustin Knight | | | | | | | Ind | | North Little Rock (North Little Rock,AR) | |
| 45 | 1332 | June-Reg | Danny Giraldo | OF | | | 0 | | | - | | Coral Park (Miami,FL) | |
| 46 | 1356** | June-Reg | John Grose | | 18 | 5-11 | 185 | R | R | College | | Green Valley (Henderson,NV) | |
| 47 | 1380** | June-Reg | Corry Parrott | CF | 20 | 6-1 | 190 | R | R | Rookie | | Cal State Fullerton | |
| 48 | 1401 | June-Reg | Jason Hutton | OF | | | 0 | | | - | | University of North Carolina | |
| 49 | 1421 | June-Reg | Tony Sterioti | P | 19 | 6-1 | 185 | R | R | - | | Kishwaukee College | |
| 50 | 1441 | June-Reg | Freddie Mitchell | | | | | | | College | | UCLA | |
