| 1 | 3 | June-Reg | Luis Montanez | IF | 18 | 6-2 | 185 | R | R | MLB | 2008-2009 | Coral Park (Miami,FL) | $2,750,000 |
| 2 | 43 | June-Reg | Bobby Hill | 2B | 22 | 5-10 | 170 | B | R | MLB | 2002-2005 | Leland (San Jose,CA) | $1,425,000 |
| 3 | 73 | June-Reg | Aaron Krawiec | P | 21 | 6-6 | 210 | L | L | AA | | Villanova University | $450,000 |
| 3 | 76 | June-Reg | Nic Jackson | OF | 20 | 6-3 | 205 | L | R | AAA | - | University of Richmond | $425,000 |
| 4 | 103 | June-Reg | Todd Wellemeyer | P | 21 | 6-3 | 205 | R | R | MLB | 2003-2009 | Bellarmine University | $245,000 |
| 5 | 133 | June-Reg | Gary Banks | OF | 18 | 6-1 | 190 | B | R | A- | | Southern Choctaw (Silas,AL) | $250,000 |
| 6 | 163 | June-Reg | J.J. Johnson | P | 18 | 6-2 | 195 | R | R | AA | | Greenbrier (Evans,GA) | $145,000 |
| 7 | 193 | June-Reg | Ryan Jorgensen | C | 21 | 6-2 | 200 | R | R | MLB | 2005-2008 | Louisiana State University | $130,000 |
| 8 | 223 | June-Reg | Dontrelle Willis | P | 18 | 6-4 | 250 | L | L | MLB | 2003-2009 | Encinal (Alameda,cA) | $200,000 |
| 9 | 253 | June-Reg | Mark Freed | P | 21 | 6-5 | 215 | L | L | AAA | | Mississippi State University | $70,000 |
| 10 | 283 | June-Reg | Blake Blasi | IF | 21 | 5-8 | 165 | B | R | AA | | Wichita State University | $70,000 |
| 11 | 313 | June-Reg | Jon Leicester | P | 21 | 6-2 | 220 | R | R | MLB | 2004-2007 | University of Memphis | |
| 12 | 343 | June-Reg | Antoine Cameron | OF | 20 | 6-1 | 215 | L | L | A+ | | Riverside Community College | |
| 13 | 373 | June-Reg | Jeremy Flanagan | P | 19 | 6-3 | 215 | R | R | AA | | San Lorenzo Valley (Felton,CA) | |
| 14 | 403 | June-Reg | Jason Dubois | OF | 21 | 6-5 | 225 | R | R | MLB | 2004-2005 | Virginia Commonwealth University | |
| 15 | 433 | June-Reg | Matt Tribble | OF | 18 | 6-2 | 200 | L | L | Rookie | | Wheaton Warrenville (Wheaton,IL) | |
| 16 | 463** | June-Reg | Chad Corona | 3B | 18 | 6-4 | 227 | R | R | College | | Santa Fe Christian (Solana Beach,CA) | |
| 17 | 493 | June-Reg | David Jablonski | P | | | | | | College | | Lord Beaverbrook (Calgary,AB) | |
| 18 | 523 | June-Reg | Buck Coats | OF | 18 | 6-3 | 195 | L | R | MLB | 2006-2008 | Valdosta (Valdosta,GA) | |
| 19 | 553 | June-Reg | Nicholas Williamson | CF | 19 | 5-11 | 180 | R | R | - | | Benedictine (Richmond,VA) | |
| 20 | 583 | June-Reg | Carmen Pignatiello | P | 17 | 6-0 | 175 | R | L | MLB | 2007-2008 | Providence College | |
| 21 | 613 | June-Reg | Lukas McKnight | C | 20 | 6-0 | 195 | L | R | AA | | Triton College | |
| 22 | 643 | June-Reg | Peter Graham | OF | 21 | 6-3 | 200 | R | R | A- | | St. John's University | |
| 23 | 673 | June-Reg | John-Paul Glascock | P | 20 | 6-7 | 220 | R | R | Ind | | Fullerton College | |
| 24 | 703** | June-Reg | Lance Dawkins | SS | 18 | 6-3 | 190 | R | R | A- | | Caledonia (Columbus,MS) | |
| 25 | 733 | June-Reg | Scott Fries | P | 22 | 6-1 | 190 | L | L | A+ | | University of Nebraska | |
| 26 | 763 | June-Reg | Jonathan Anderson | CF | 17 | 5-11 | 195 | R | R | Ind | | Grace Prep Academy (Arlington,TX) | |
| 27 | 793 | June-Reg | Jason Szuminski | P | 21 | 6-4 | 220 | R | R | MLB | 2004-2004 | Massachusetts Institute of Technology | |
| 28 | 823 | June-Reg | Ryan Burnau | P | 18 | 6-4 | 195 | R | R | AAA | | Huntington North (Markle,IN) | |
| 29 | 853 | June-Reg | Matt Samuels | | 18 | 6-2 | 210 | R | R | Rookie | | South Vigo (Terre Haute,IN) | |
| 30 | 883 | June-Reg | Patrick Flynn | | | | | | | College | | Providence Catholic (New Lenox,IL) | |
| 31 | 913 | June-Reg | Wes O'Brien | P | 17 | 6-6 | 240 | R | R | A+ | | Don Antonio Lugo (Chino,CA) | |
| 32 | 943** | June-Reg | Orlando Diaz | SS | 18 | 6-2 | 195 | R | R | A- | | Downers Grove South (Downers Grove,IL) | |
| 33 | 973 | June-Reg | Larry Barnes | 1B | 25 | 6-1 | 195 | L | L | MLB | 2001-2003 | Pine Bluff (Pine Bluff,AR) | |
| 34 | 1003 | June-Reg | Eric Albright | P | 22 | 6-2 | 190 | R | R | A+ | | Chapman University | |
| 35 | 1033 | June-Reg | Rocky Evans | p | | | | | | College | | Motlow State Community College | |
| 36 | 1063 | June-Reg | John Watkins | 1B | | | 0 | | | - | | Petal (Petal,MS) | |
| 37 | 1093 | June-Reg | Donnie Bair | | 19 | 6-3 | 214 | R | L | College | | Merced College | |
| 38 | 1123 | June-Reg | Jon Nourie | | 18 | 6-3 | 205 | L | L | Ind | | Munster (Munster,IN) | |
| 39 | 1153 | June-Reg | Joseph Catomer | P | 17 | 6-2 | 225 | R | R | - | | Prospect (Mount Prospect,IL) | |
| 40 | 1183 | June-Reg | Jeremy Mannin | P | 19 | 6-6 | 175 | L | L | - | | Wenatchee Valley Community College | |
| 41 | 1212** | June-Reg | Brad Blackwell | P | 18 | 6-2 | 215 | R | R | AA | | | |
| 42 | 1241 | June-Reg | Federico Baez | P | 18 | 6-2 | 170 | R | R | AAA | | Laredo Community College | |
| 43 | 1270 | June-Reg | Thomas Olejniczak | | | | | | | College | | Fayetteville (Fayetteville,AR) | |
| 44 | 1298 | June-Reg | Stephen Solwick | P | | | 0 | | | - | | Southwestern Illinois College | |
| 45 | 1324 | June-Reg | Sam Cooper | SS | 22 | 5-10 | 175 | B | R | A+ | | University of New Orleans | |
| 46 | 1349 | June-Reg | Jason Mcintyre | | | | | | | College | | Plainville (Plainville,CT) | |
| 47 | 1373** | June-Reg | Jamil Knight | P | 17 | 6-4 | 200 | R | R | College | | Selma (Selma,AL) | |
| 48 | 1394 | June-Reg | Lance Laury | CF | | | 0 | | | - | | Lower Richland (Hopkins,SC) | |
| 49 | 1414** | June-Reg | Enrique Cruz | SS | 18 | 5-10 | 185 | B | R | AA | | Bellaire (Bellaire,TX) | |
| 50 | 1434** | June-Reg | Nathan Pendley | | 18 | 6-4 | 220 | L | L | A+ | | West Albany (Albany,GA) | |
