| 1 | 18 | June-Reg | Miguel Negron | OF | 17 | 6-2 | 170 | L | L | AAA | | Manuela Toro (Caguas, PR ) | $950,000 |
| 1 | 33 | June-Reg | Dustin McGowan | P | 18 | 6-3 | 190 | R | R | MLB | 2005-2008 | Long County (Ludowici,GA) | $950,000 |
| 2 | 45 | June-Reg | Peter Bauer | P | 21 | 6-7 | 250 | R | R | AAA | | University of South Carolina | $800,000 |
| 2 | 58 | June-Reg | Dominic Rich | IF | 20 | 5-10 | 190 | L | R | AA | | Auburn University | $600,000 |
| 3 | 88 | June-Reg | Morrin Davis | OF | 17 | 6-2 | 190 | R | R | A | | Hillsborough (Tampa,FL) | $440,000 |
| 4 | 118 | June-Reg | Raul Tablado | IF | 18 | 6-2 | 175 | R | R | AA | | Southridge (Miami,FL) | $285,000 |
| 5 | 148 | June-Reg | Mike Smith | P | 22 | 5-11 | 195 | R | R | MLB | 2002-2006 | University of Richmond | $72,500 |
| 6 | 178 | June-Reg | Rich Thompson | H | 21 | 6-3 | 180 | L | R | MLB | 2004-2009 | James Madison University | $105,000 |
| 7 | 208 | June-Reg | Aaron Sisk | IF | 21 | 6-0 | 185 | R | R | AA | | University of New Mexico | $90,000 |
| 8 | 238 | June-Reg | David Abbott | P | 22 | 6-4 | 230 | R | R | AAA | | University of Arizona | $10,000 |
| 9 | 268 | June-Reg | Nom Siriveaw | 3B | 19 | 6-3 | 195 | B | R | A | | Oklahoma State University | $70,000 |
| 10 | 298 | June-Reg | Jerrod Payne | P | 22 | 5-10 | 190 | R | R | AAA | | University of North Florida | $6,000 |
| 11 | 328 | June-Reg | Tracy Thorpe | P | 19 | 6-4 | 254 | R | R | AAA | | Melbourne (Melbourne,FL) | |
| 12 | 358 | June-Reg | Vinnie Chulk | P | 21 | 6-2 | 185 | R | R | MLB | 2003-2009 | Saint Thomas University | |
| 13 | 388 | June-Reg | Shawn Fagan | IF | 22 | 5-11 | 200 | R | R | AAA | | Penn State University | |
| 14 | 418 | June-Reg | Charles Talanoa | P | 19 | 6-5 | 230 | R | R | Rookie | | Los Angeles Harbor College | |
| 15 | 448 | June-Reg | Eric Stephenson | P | 17 | 6-4 | 180 | R | L | A | | Triton (Erwin,NC) | |
| 16 | 478 | June-Reg | Richard Brosseau | IF | 21 | 5-11 | 180 | L | R | A+ | | University of Minnesota | |
| 17 | 508 | June-Reg | Josh McMillan | P | 21 | 6-0 | 175 | L | L | A | | Riverside Community College | |
| 18 | 538 | June-Reg | Vince Perkins | P | 18 | 6-5 | 225 | L | R | AAA | | Lake City Community College | |
| 19 | 568 | June-Reg | John Blackburn | C | 17 | 6-1 | 205 | | | A- | | | |
| 20 | 598 | June-Reg | Andy McCulloch | P | 22 | 6-1 | 205 | R | R | A | | UNLV | |
| 21 | 628 | June-Reg | Jesse Harper | P | 19 | 6-4 | 205 | R | R | A+ | | Galveston College | |
| 22 | 658 | June-Reg | Ron Davenport | SS | 18 | 6-2 | 190 | L | R | AA | | Leesville Road (Raleigh,NC) | |
| 23 | 688 | June-Reg | Scott Cavey | | 22 | 6-5 | 200 | R | R | College | | University of Notre Dame | |
| 24 | 718 | June-Reg | Kurt Keene | IF | 22 | 6-0 | 190 | R | R | AAA | | University of Florida | |
| 25 | 748 | June-Reg | Willie Rivera | 2B | 18 | 6-0 | 155 | L | R | A | | Turabo University (PR) | |
| 26 | 778 | June-Reg | Jeremy Johnson | OF | 22 | 6-1 | 185 | L | L | A+ | | Southeast Missouri State University | |
| 27 | 808 | June-Reg | Brian Sellier | OF | 22 | 6-1 | 205 | L | R | AAA | | Grand Canyon University | |
| 28 | 838 | June-Reg | Chris Small | C | 22 | 6-0 | 210 | R | R | A- | | Princeton University | |
| 29 | 868 | June-Reg | Chris Neuman | | | | | | | College | | Western Hills (Benbrook,TX) | |
| 30 | 898 | June-Reg | Lanny Patten | P | 17 | 6-3 | 205 | R | R | A+ | | Allan Hancock College | |
| 31 | 928 | June-Reg | Will Morris | | | | | | | A+ | | Cal Poly | |
| 32 | 958 | June-Reg | Kris Kozlowski | P | 22 | 6-4 | 210 | L | L | A- | | Fordham University | |
| 33 | 988 | June-Reg | Tommy Callen | | 22 | 5-11 | 175 | R | R | Ind | | Santa Clara University | |
| 34 | 1018 | June-Reg | Jeremy Ridley | 2B | 22 | 6-2 | 195 | B | R | A- | | Ball State University | |
| 35 | 1048 | June-Reg | Blake Gill | 2B | 18 | 5-11 | 190 | L | R | Ind | | Manatee (Bradenton,FL) | |
| 36 | 1078 | June-Reg | Steve Wood | 1B | | | 0 | | | A- | | Cal Poly | |
| 37 | 1108 | June-Reg | Jeromie Spillman | P | 21 | 5-11 | 180 | L | L | A | | Grand Canyon University | |
| 38 | 1138 | June-Reg | Daniel Huesgen | P | 22 | 6-0 | 195 | R | R | A- | | Southeast Missouri State University | |
| 39 | 1168 | June-Reg | Neesan Zieour | OF | 19 | 5-11 | 185 | R | R | A+ | | Sacramento City College | |
| 40 | 1197 | June-Reg | Tom Mclane | P | | | 0 | | | - | | St. Petersburg College | |
| 41 | 1226 | June-Reg | Kirk Gosch | P | 19 | | 0 | | | A- | | Spokane Community College | |
| 42 | 1255 | June-Reg | Matt Sorensen | | | | | | | College | | Cal State Fullerton | |
| 43 | 1283** | June-Reg | Matt Kniginyzky | P | 17 | 6-3 | 185 | L | R | AA | | Lorne Park (Mississauga,ON) | |
| 44 | 1310** | June-Reg | Derek Mcneil | 2B | 18 | 5-11 | 185 | R | R | Rookie | | Land O'Lakes (Land O'Lakes,FL) | |
| 45 | 1336 | June-Reg | Dennis Robinson | | 17 | 6-3 | 205 | R | R | A | | Lakeland (Shrub Oak,NY) | |
| 46 | 1360** | June-Reg | Patrick Breen | OF | 18 | 6-3 | 210 | L | L | AA | | Servite (Anaheim,CA) | |
| 47 | 1384 | June-Reg | Casey Martinez | C | 22 | 5-11 | 200 | R | R | AAA | | Sacramento State | |
| 48 | 1404** | June-Reg | Cody Clark | C | 18 | 6-2 | 215 | R | R | AAA | | Fayetteville (Fayetteville,AR) | |
| 49 | 1424 | June-Reg | Jacob Bailey | P | | | 0 | | | - | | Indian River State College | |
| 50 | 1444 | June-Reg | Stuart Mcfarland | | 22 | 6-5 | 210 | L | L | A- | | University of Florida | |