| 1 | 29 | June-Reg | Adam Wainwright | P | 18 | 6-6 | 190 | R | R | MLB | 2005-2009 | Glynn Academy (Brunswick,GA) | $1,250,000 |
| 1 | 30 | June-Reg | Scott Thorman | IF | 18 | 6-3 | 205 | L | R | MLB | 2006-2007 | Preston (Cambridge,ON) | $1,225,000 |
| 1 | 38 | June-Reg | Kelly Johnson | P | 18 | 6-1 | 180 | L | R | MLB | 2005-2009 | Westwood (Austin,TX) | $790,000 |
| 1 | 40 | June-Reg | Aaron Herr | IF | 19 | 5-11 | 183 | R | R | AAA | | Hempfield (Landisville,PA) | $850,000 |
| 2 | 51 | June-Reg | Bubba Nelson | P | 18 | 6-2 | 200 | R | R | AAA | | Riverdale Baptist (Upper Marlboro,MD) | $675,000 |
| 2 | 70 | June-Reg | Bryan Digby | P | 18 | 6-2 | 190 | R | R | AA | | McIntosh (Peachtree City,GA) | $450,000 |
| 3 | 100 | June-Reg | Blaine Boyer | P | 18 | 6-3 | 190 | R | R | MLB | 2005-2009 | Walton (Marietta,GA) | $375,000 |
| 4 | 106 | June-Reg | Zach Miner | P | 18 | 6-3 | 190 | R | R | MLB | 2006-2009 | Palm Beach Gardens (Palm Beach Gardens,FL) | $1,250,000 |
| 4 | 130** | June-Reg | Brian Montalbo | P | 18 | 6-4 | 210 | B | R | A | | Dimond (Anchorage,AK) | |
| 5 | 160 | June-Reg | Chris Waters | P | 19 | 6-0 | 170 | L | L | MLB | 2008-2009 | South Florida Community College | $158,000 |
| 6 | 190 | June-Reg | Matt Merricks | P | 17 | 5-11 | 180 | L | L | AA | | Oxnard (Oxnard,CA) | $168,000 |
| 7 | 220 | June-Reg | Brian Almeida | P | 18 | 6-5 | 210 | L | R | A | | Lemon Bay (Englewood,FL) | $175,000 |
| 8 | 250 | June-Reg | Robert Perkins | C | 19 | 5-11 | 210 | R | R | Ind | | Modesto Junior College | $60,000 |
| 9 | 280 | June-Reg | Ahmad Woods | OF | 18 | 6-5 | 180 | R | R | Rookie | | Redan (Stone Mountain,GA) | $90,000 |
| 10 | 310 | June-Reg | Rod Douglas | P | 18 | 6-0 | 185 | R | R | Rookie | | Colmesneil (Colmesneil,TX) | $80,000 |
| 11 | 340 | June-Reg | Kevin Cust | RF-C | 18 | 6-1 | 200 | R | R | Rookie | | Immaculata (Somerville,NJ) | |
| 12 | 370** | June-Reg | Keoni DeRenne | ss | 21 | 5-7 | 165 | B | R | AAA | | University of Arizona | |
| 13 | 400 | June-Reg | Jonathan Rogers | P | 18 | 6-1 | 180 | R | R | Rookie | | Lee (Midland,TX) | |
| 14 | 430 | June-Reg | Mike Machen | P | 18 | 5-11 | 190 | R | R | Rookie | | McGill-Toolen (Mobile,AL) | |
| 15 | 460 | June-Reg | Armando Tejero | 1B | 17 | 6-3 | 180 | L | L | Rookie | | Elvira M Colon (Santa Isabel,PR) | |
| 16 | 490 | June-Reg | Andy Bent | P | 21 | 6-2 | 190 | R | R | A+ | | University of Nebraska | |
| 17 | 520 | June-Reg | Trey Hodges | P | 22 | 6-3 | 187 | R | R | MLB | 2002-2003 | Louisiana State University | |
| 18 | 550 | June-Reg | Michael Davern | P | 18 | 6-4 | 210 | R | R | Ind | | Brea-Olinda (Brea,CA) | |
| 19 | 580 | June-Reg | Charles Thomas | OF | 21 | 6-0 | 190 | L | L | MLB | 2004-2005 | Western Carolina University | |
| 20 | 610 | June-Reg | Kyle Roat | C | 20 | 5-10 | 180 | R | R | AA | | Connors State College | |
| 21 | 640 | June-Reg | Matt Wright | P | 18 | 6-4 | 220 | R | R | AAA | | Robinson (Robinson,TX) | |
| 22 | 670 | June-Reg | Josh Tillery | P | 21 | 6-6 | 250 | R | R | AA | | Dodge City Community College | |
| 23 | 700 | June-Reg | Mike Smalley | | 21 | 6-1 | 200 | R | L | A+ | | University of Florida | |
| 24 | 730 | June-Reg | Robert Moose | 1B | 22 | 6-4 | 220 | R | R | Rookie | | Bridgewater College | |
| 25 | 760** | June-Reg | Tim McClendon | | 18 | 6-6 | 185 | R | R | Ind | | Dr. Phillips (Orlando,FL) | |
| 26 | 790 | June-Reg | Alph Coleman | LF | 21 | 6-3 | 187 | R | R | A+ | | Texas Southern University | |
| 27 | 820** | June-Reg | Joshua Wyrick | LF | 18 | 6-3 | 190 | L | L | A | | Centennial (Bakersfield,CA) | |
| 28 | 850 | June-Reg | Erick Contreras | SS | 20 | 5-11 | 165 | B | R | A | | Culver-Stockton College (San Juan,PR) | |
| 29 | 880 | June-Reg | Adam LaRoche | 1B | 20 | 6-3 | 180 | L | L | MLB | 2004-2009 | Seminole State College | |
| 30 | 910 | June-Reg | Quentin Jones | P | 21 | 6-4 | 210 | R | R | A | | Norfolk State University | |
| 31 | 940** | June-Reg | Delwyn Young | 2B | 18 | 5-10 | 209 | B | R | MLB | 2006-2009 | Littlerock (Lancaster,CA) | |
| 32 | 970** | June-Reg | Callix Crabbe | 2B | 17 | 5-8 | 190 | B | R | MLB | 2008-2008 | Stone Mountain (Lithonia,GA) | |
| 33 | 1000** | June-Reg | Anthony Gwynn | OF | 17 | 6-0 | 185 | L | R | MLB | 2006-2009 | Poway (Poway,CA) | $0 |
| 34 | 1030** | June-Reg | Adam Brandenburg | P | 18 | 6-5 | 225 | L | L | AA | | South Gwinnett (Snellville,GA) | |
| 35 | 1060 | June-Reg | William Hall | P | | | 0 | | | - | | Evant School (Evant,TX) | |
| 36 | 1090 | June-Reg | Efren Lira | P | 18 | 6-3 | 240 | R | R | A | | Mount San Antonio College | |
| 37 | 1120** | June-Reg | Josh Parker | P | 19 | 6-5 | 220 | R | R | AAA | | Wallace Community College | |
| 38 | 1150 | June-Reg | Frank Arteaga | P | 18 | 6-1 | 170 | R | R | A | | East Los Angeles College | |
| 39 | 1180 | June-Reg | Jimmy Rhodes | | 18 | 6-3 | 210 | R | R | College | | Jefferson (Shepherdstown,WV) | |
| 40 | 1209** | June-Reg | Adam Hilzendeger | P | 18 | 6-4 | 190 | R | R | - | | Palmdale (Palmdale,CA) | |
| 41 | 1238** | June-Reg | Shane Hawk | P | 18 | 6-4 | 180 | R | L | A+ | | Midwest City (Midwest City,OK) | |
| 42 | 1267 | June-Reg | Zachariah Watson | P | | | 0 | | | - | | Columbus (Columbus,GA) | |
| 43 | 1295 | June-Reg | Daniel Anderson | CF | | | 0 | | | - | | Temple University | |
| 44 | 1321 | June-Reg | Tanner Holecek | OF | | | 0 | | | - | | Temple University | |
| 45 | 1347 | June-Reg | Craig Bragg | CF | | | 0 | | | - | | | |
| 46 | 1371** | June-Reg | Brandon Green | | 18 | 6-0 | 195 | B | R | A | | Adair (Adair,OK) | |
| 47 | 1392 | June-Reg | Justin Bergh | P | | | 0 | | | - | | Oak Hall (Gainesville,FL) | |
| 48 | 1412** | June-Reg | Jason Herman | P | 18 | 6-3 | 210 | R | R | A | | Marshfield (Marshfield,MO) | |
| 49 | 1432** | June-Reg | Bill Edwards | | 19 | 6-3 | 185 | R | R | AA | | Evangelical Christian (Germantown,TN) | |
| 50 | 1452 | June-Reg | Drew Jackson | of | 16 | 6-0 | 200 | L | L | Ind | | University (Morgantown,WV) | |