| 1 | 4 | June-Reg | Mike Stodolka | P | 18 | 6-2 | 205 | L | L | AAA | | Centennial (Corona,CA) | $2,500,000 |
| 2 | 44 | June-Reg | Mike Tonis | C | 21 | 6-3 | 220 | R | R | MLB | 2004-2004 | University of California | $800,000 |
| 3 | 74 | June-Reg | Scott Walter | C | 21 | 6-2 | 200 | R | R | AAA | - | Loyola Marymount University | $447,500 |
| 4 | 104 | June-Reg | David DeJesus | OF | 20 | 6-0 | 175 | L | L | MLB | 2003-2009 | Rutgers University | $245,000 |
| 5 | 134 | June-Reg | Zach McClellan | P | 21 | 6-5 | 200 | R | R | MLB | 2007-2007 | Indiana University | $170,000 |
| 6 | 164 | June-Reg | Brian Bass | P | 18 | 6-1 | 195 | R | R | MLB | 2008-2009 | Robert E. Lee (Montgomery,AL) | $100,000 |
| 7 | 194 | June-Reg | Jason Kaanoi | P | 17 | 5-11 | 200 | L | R | A+ | | Kamehameha (Honolulu,HI) | $80,000 |
| 8 | 224 | June-Reg | Luis Cotto | IF | 18 | 5-10 | 180 | R | R | AA | | Instituto Cumbre (Trujillo Alto,PR) | $70,000 |
| 9 | 254 | June-Reg | Luis Escobar | C | 17 | 5-10 | 190 | L | R | Ind | | Fernando Callejo (Manati,PR) | $60,000 |
| 10 | 284 | June-Reg | Jason Fingers | P | 21 | 6-5 | 180 | R | R | A | | Arizona State University | $60,000 |
| 11 | 314 | June-Reg | Ryan Bukvich | P | 22 | 6-2 | 250 | R | R | MLB | 2002-2008 | Northwest Rankin (Brandon,MS) | |
| 12 | 344 | June-Reg | Darren Fenster | IF | 21 | 5-9 | 175 | R | R | AA | - | Rutgers University | |
| 13 | 374 | June-Reg | Jon Metzger | P | 21 | 6-1 | 210 | L | L | A | | University of Virginia | |
| 14 | 404 | June-Reg | Justin Gemoll | IF | 22 | 6-2 | 205 | R | R | AAA | - | USC | |
| 15 | 434** | June-Reg | Adam Peterson | P | 21 | 6-3 | 220 | R | R | MLB | 2004-2004 | Wichita State University | |
| 16 | 464 | June-Reg | Joey Baker | P | 21 | 6-5 | 200 | R | R | A | | San Jose State University | |
| 17 | 494 | June-Reg | Billy Keppinger | LF | 21 | 6-0 | 195 | L | L | AA | | Cumberland University | |
| 18 | 524 | June-Reg | Thomas Saye | P | 19 | 6-0 | 180 | B | R | Rookie | | Newberry (Newberry,SC) | |
| 19 | 554 | June-Reg | Aaron Melebeck | SS | 22 | 5-11 | 175 | R | R | A- | | University of Houston | |
| 20 | 584 | June-Reg | Justin Cowan | C | 22 | 5-10 | 190 | R | R | A+ | | University of Nebraska | |
| 21 | 614 | June-Reg | Ian Ferguson | P | 20 | 6-4 | 225 | R | R | AAA | | Regis University | |
| 22 | 644 | June-Reg | Mike Natale | P | 20 | 6-0 | 195 | R | R | AA | | Lewis-Clark State College | |
| 23 | 674** | June-Reg | Robert Mosby | 1B-OF | 18 | 6-3 | 240 | R | R | A | | East St. Louis (IN Senior) | |
| 24 | 704 | June-Reg | Mike Matthews | P | 26 | 6-2 | 175 | L | L | MLB | 2000-2005 | Columbia State Community College | |
| 25 | 734** | June-Reg | Billy Brian | P | 21 | 6-5 | 230 | R | R | A | | Louisiana State University | |
| 26 | 764 | June-Reg | Dusty Wrightsman | P | 20 | 6-4 | 215 | R | R | A+ | | Faulkner State Community College | |
| 27 | 794 | June-Reg | Marco Cunningham | OF | 22 | 5-10 | 185 | R | R | AA | | Texas Tech University | |
| 28 | 824 | June-Reg | Louis Wieben | P | | | 0 | | | Ind | | Pitt Community College | |
| 29 | 854 | June-Reg | Daniel McKinney | P | | | 0 | | | - | | White Station School (Memphis,TN) | |
| 30 | 884 | June-Reg | Jebson Thomas | P | 21 | 6-4 | 205 | R | R | A- | | Montreat College | |
| 31 | 914 | June-Reg | Ruben Gotay | IF | 17 | 5-11 | 160 | B | R | MLB | 2004-2008 | Indian Hills Community College-Centerville | |
| 32 | 944 | June-Reg | Rich Carroll | 1B | 20 | 6-3 | 220 | R | R | Rookie | | St. Petersburg College | |
| 33 | 974** | June-Reg | Jason Cierlik | P | 19 | 6-0 | 200 | L | L | A+ | | Kirkwood Community College | |
| 34 | 1004 | June-Reg | Luca Petrocelli | P | | | 0 | | | - | | Hackensack (Hackensack,NJ) | |
| 35 | 1034** | June-Reg | Brad Knox | P | 18 | 6-3 | 210 | R | R | AAA | | Cypress Falls (Houston,TX) | |
| 36 | 1064 | June-Reg | Darnell Suber | OF | | | 0 | | | - | | District 55 (Laurens,SC) | |
| 37 | 1094** | June-Reg | Marland Williams | OF | 19 | 5-9 | 175 | R | R | AAA | - | Williston (Williston,FL) | |
| 38 | 1124 | June-Reg | John Caruso | C | | | 0 | | | - | | Chaparral (Las Vegas,NV) | |
| 39 | 1154 | June-Reg | William Hooten | P | | | 0 | | | - | | Evangel Christian Academy (Waskom,TX) | |
| 40 | 1184 | June-Reg | Mike Abdalla | | | | | | | College | | Youngstown State University | |
| 41 | 1213** | June-Reg | Dustin Timm | | 18 | 6-4 | 185 | R | R | College | | Yutan (Yutan,NE) | |
| 42 | 1242 | June-Reg | Odannys Ayala | OF | 19 | 5-11 | 185 | R | R | A+ | | Frank Phillips College | |
| 43 | 1271 | June-Reg | Britton Bearden | SS-2B | | | 0 | | | - | | Lexington (Lexington,SC) | |
| 44 | 1299** | June-Reg | Steve Nielsen | P | | 6-6 | 200 | R | R | Ind | | Joliet Township (Joliet,IL) | |
| 45 | 1325 | June-Reg | Reinaldo Colon | P | | | 0 | | | - | | Patria La Torres Ramirez (San Sebastian,PR) | |
| 46 | 1350** | June-Reg | Seth Davidson | IF | 21 | 6-0 | 170 | B | R | AA | | USC | |
| 47 | 1374 | June-Reg | Brandon Bird | | | | | | | College | | Northwest (Omaha,NE) | |
| 48 | 1395 | June-Reg | Reeves Smith | | 18 | 6-6 | 190 | R | R | College | | Cleveland (Cleveland,MS) | |
| 49 | 1415 | June-Reg | Clint Mokry | | | | | | | College | | Taylor (Houston,TX) | |
| 50 | 1435 | June-Reg | Hector Rosado | P | 19 | 5-11 | 175 | L | L | A | | Hill College | |