| 1 | 27 | June-Reg | Robert Stiehl | C | 19 | 6-3 | 205 | R | R | AA | | El Camino College | $1,250,000 |
| 2 | 67 | June-Reg | Chad Qualls | P | 21 | 6-5 | 205 | R | R | MLB | 2004-2009 | University of Nevada | $415,000 |
| 3 | 97 | June-Reg | Anthony Pluta | P | 17 | 6-2 | 190 | R | R | A+ | | Las Vegas (Las Vegas,NV) | $450,000 |
| 4 | 127** | June-Reg | Eric Keefner | 1B | 18 | 6-3 | 220 | R | R | Ind | | De La Salle (Chicago,IL) | |
| 5 | 157 | June-Reg | Jake Whitesides | CF | 19 | 5-11 | 190 | L | R | A | | Hickman (Columbia,MO) | $170,000 |
| 6 | 187 | June-Reg | Tommy Whiteman | SS | 20 | 6-3 | 175 | R | R | AAA | | University of Oklahoma | $115,000 |
| 7 | 217 | June-Reg | Joe Lydic | IF | 21 | 6-4 | 180 | R | R | A+ | | University of Pittsburgh | $75,000 |
| 8 | 247 | June-Reg | Cory Doyne | P | 18 | 6-2 | 185 | R | R | MLB | 2007-2007 | Land O'Lakes (Land O'Lakes,FL) | $61,000 |
| 9 | 277 | June-Reg | Eric Bruntlett | IF | 22 | 6-0 | 200 | R | R | MLB | 2003-2009 | Stanford University | $30,000 |
| 10 | 307 | June-Reg | Nathan Nelson | 3B | 23 | 6-1 | 200 | R | R | A | | University of Louisiana at Lafayette | $25,000 |
| 11 | 337** | June-Reg | Bob McCrory | P | 18 | 6-0 | 205 | R | R | MLB | 2008-2009 | Columbus (Columbus,MS) | $0 |
| 12 | 367** | June-Reg | Ryan Hamilton | P | 17 | 6-2 | 210 | R | R | Ind | | University of San Diego | |
| 13 | 397 | June-Reg | Anthony Acevedo | OF | 22 | 6-5 | 200 | L | L | AA | | Fresno State University | |
| 14 | 427 | June-Reg | Anthony Angel | 2B | 21 | 6-0 | 195 | R | R | A | | Loyola Marymount University | |
| 15 | 457 | June-Reg | Todd Self | OF | 21 | 6-5 | 210 | L | R | MLB | 2005-2005 | University of Louisiana at Lafayette | |
| 16 | 487 | June-Reg | Monte Mansfield | P | 19 | 6-4 | 215 | R | R | AA | | Riverside Community College | |
| 17 | 517 | June-Reg | Ralph Hicks | P | 22 | 5-10 | 180 | B | L | A- | | Centenary College | |
| 18 | 547 | June-Reg | Eric Lee | RF | 22 | 5-10 | 180 | R | R | A | | University of Houston | |
| 19 | 577** | June-Reg | Michael Bourn | OF | 17 | 5-11 | 180 | L | R | MLB | 2006-2009 | Nimitz (Houston,TX) | $0 |
| 20 | 607 | June-Reg | Jory Coughenour | P | 22 | 6-1 | 200 | R | R | AA | | University of Pittsburgh | |
| 21 | 637 | June-Reg | Steve Mortimer | | 19 | 6-3 | 215 | L | L | AA | | Yakima Valley Community College | |
| 22 | 667 | June-Reg | Jorge Ruiz | 2B | | | 0 | | | - | | Notre Dame (Caguas,PR) | |
| 23 | 697 | June-Reg | Mark Hamilton | P | 22 | 6-2 | 210 | L | L | A+ | | Texas Christian University | |
| 24 | 727 | June-Reg | Paul Lockhart | OF | 22 | 6-0 | 195 | B | L | A | | San Diego State University | |
| 25 | 757 | June-Reg | Craig Petulla | P | 21 | 6-2 | 185 | R | R | Rookie | | Slippery Rock University of Pennsylvania | |
| 26 | 787 | June-Reg | Jonathan Krysa | P | 21 | 6-1 | 185 | R | R | A | | Rockhurst University | |
| 27 | 817 | June-Reg | Andy Hutchings | | 18 | 6-1 | 205 | R | R | Ind | | Alfred-Almond (Almond,NY) | |
| 28 | 847 | June-Reg | Damon Yee | P | 22 | 6-2 | 190 | R | R | A- | | Vanderbilt University | |
| 29 | 877 | June-Reg | Mike Johnson | C | | | 0 | | | - | | Bellevue (Bellevue,WA) | |
| 30 | 907 | June-Reg | Mike Burns | P | 21 | 6-1 | 190 | R | R | MLB | 2005-2009 | Cal State Los Angeles | |
| 31 | 937 | June-Reg | T.J. Soto | IF | 22 | 5-11 | 200 | R | R | AA | | Louisiana Tech University | |
| 32 | 967 | June-Reg | Mickey Mckee | C-1B | 22 | 6-0 | 185 | R | R | A | | Tulane University | |
| 33 | 997** | June-Reg | Weston Burnette | P | 18 | 6-4 | 190 | L | R | Rookie | | Charles D. Owen (Black Mountain,NC) | |
| 34 | 1027 | June-Reg | Jesse Floyd | | 19 | 6-5 | 185 | R | R | AA | | San Jacinto College | |
| 35 | 1057 | June-Reg | David Frame | | | | | | | College | | Blinn College | |
| 36 | 1087 | June-Reg | Christerson Spencer | P | | | 0 | | | - | | San Jacinto College | |
| 37 | 1117 | June-Reg | George Drusina | P | 19 | 6-3 | 190 | R | R | - | | El Paso CC (El Paso CC) | |
| 38 | 1147 | June-Reg | Christopher Sawyers | P-SS | | | 0 | | | - | | | |
| 39 | 1177 | June-Reg | Darryl Chever | CF | | | 0 | | | College | | Delaware Technical & Community College | |
| 40 | 1206 | June-Reg | Deshain Beasley | CF | | | 0 | | | - | | Bellevue Community College | |
| 41 | 1235 | June-Reg | Aaron Coiteux | 2B | 18 | 5-10 | 170 | R | R | - | | | |
| 42 | 1264 | June-Reg | Jason Godkin | | 19 | 6-3 | 185 | L | L | College | | Chabot College | |
| 43 | 1292** | June-Reg | Jason Windsor | P | 17 | 6-2 | 220 | R | R | MLB | 2006-2006 | Leigh (San Jose,CA) | |